miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 1181 0.71 0.276596
Target:  5'- uGUGCcUCGUGCUGCGCGgcagCGCg--- -3'
miRNA:   3'- gCAUGuAGCGCGACGCGCa---GCGgcuu -5'
24329 3' -57.7 NC_005263.2 + 2253 0.66 0.545308
Target:  5'- uGUACGUguaguuguucgaGCGCaGCGCGuUCGCCGu- -3'
miRNA:   3'- gCAUGUAg-----------CGCGaCGCGC-AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 3174 0.66 0.536772
Target:  5'- uCGUGg--CGCggaauaacugccGCUGCGCGUCGgCGAGc -3'
miRNA:   3'- -GCAUguaGCG------------CGACGCGCAGCgGCUU- -5'
24329 3' -57.7 NC_005263.2 + 3313 0.66 0.536772
Target:  5'- gCGcgGCcgCGCGguguucaacguCUGCGCGcCGCCGGc -3'
miRNA:   3'- -GCa-UGuaGCGC-----------GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 3555 0.74 0.172371
Target:  5'- aGUGC--CGCGCaGCGCGUCGgCCGAc -3'
miRNA:   3'- gCAUGuaGCGCGaCGCGCAGC-GGCUu -5'
24329 3' -57.7 NC_005263.2 + 4208 0.68 0.425434
Target:  5'- aGUACG-CGCGCgucGaCGgGUCGUCGAGg -3'
miRNA:   3'- gCAUGUaGCGCGa--C-GCgCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 4730 0.66 0.505207
Target:  5'- gGUACGUCGCGCc-CGCGagcaCGCCa-- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCa---GCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 4894 0.66 0.505207
Target:  5'- uGUaGCG-CGCGCUGCGauagcgcgcCGUCGCCa-- -3'
miRNA:   3'- gCA-UGUaGCGCGACGC---------GCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 6054 0.66 0.526169
Target:  5'- uCGUugGcggCGCGCUucaCGCG-CGCCGAc -3'
miRNA:   3'- -GCAugUa--GCGCGAc--GCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 6357 0.67 0.454503
Target:  5'- uCGUugAUCGCGCcGUGCcgcccgaaGUUGCCGc- -3'
miRNA:   3'- -GCAugUAGCGCGaCGCG--------CAGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 6369 0.67 0.484613
Target:  5'- gCGUAuccCAUCG-GUUGCGCGUCguGCCGu- -3'
miRNA:   3'- -GCAU---GUAGCgCGACGCGCAG--CGGCuu -5'
24329 3' -57.7 NC_005263.2 + 6443 0.75 0.150374
Target:  5'- uCGUGCAUCGCGa-GCagGCaGUCGCCGAAc -3'
miRNA:   3'- -GCAUGUAGCGCgaCG--CG-CAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 6737 0.67 0.472451
Target:  5'- aCGUACAcacUCGCGCgucacguccauCGCG-CGCCGGg -3'
miRNA:   3'- -GCAUGU---AGCGCGac---------GCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 8737 0.68 0.406682
Target:  5'- gGUGCGUCGUaGaaGCGCGcCGCCGc- -3'
miRNA:   3'- gCAUGUAGCG-CgaCGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 9825 0.67 0.453516
Target:  5'- gCGUGCAUCacguugacgaacgGCGCgGCGCGcUUGCuCGAc -3'
miRNA:   3'- -GCAUGUAG-------------CGCGaCGCGC-AGCG-GCUu -5'
24329 3' -57.7 NC_005263.2 + 10139 0.67 0.492804
Target:  5'- aCGUGCAcuucccacgaggCGgGCaGCuugGCGUCGCCGAGa -3'
miRNA:   3'- -GCAUGUa-----------GCgCGaCG---CGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 10650 0.66 0.536772
Target:  5'- aGUACAcauggacgcCGCGCagaccGCGCG-CGCCGAc -3'
miRNA:   3'- gCAUGUa--------GCGCGa----CGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 12177 0.66 0.547449
Target:  5'- aCGUAUAaCG-GCacGCGCGUCGCCa-- -3'
miRNA:   3'- -GCAUGUaGCgCGa-CGCGCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 15600 0.67 0.474468
Target:  5'- aCGUGCuggcgcuuAUCGCGUcggaacUGC-CGUCGCUGAAu -3'
miRNA:   3'- -GCAUG--------UAGCGCG------ACGcGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 17476 0.72 0.239624
Target:  5'- uGUACGucaugaacgcccugaUCGCGCgcgGCGCGUCGaUCGAu -3'
miRNA:   3'- gCAUGU---------------AGCGCGa--CGCGCAGC-GGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.