Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24329 | 3' | -57.7 | NC_005263.2 | + | 47344 | 1.06 | 0.000779 |
Target: 5'- uCGUACAUCGCGCUGCGCGUCGCCGAAa -3' miRNA: 3'- -GCAUGUAGCGCGACGCGCAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 21387 | 0.67 | 0.484613 |
Target: 5'- gGUGCGcuUCGCGCUGCcGCag-GCCGGc -3' miRNA: 3'- gCAUGU--AGCGCGACG-CGcagCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 4894 | 0.66 | 0.505207 |
Target: 5'- uGUaGCG-CGCGCUGCGauagcgcgcCGUCGCCa-- -3' miRNA: 3'- gCA-UGUaGCGCGACGC---------GCAGCGGcuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 2253 | 0.66 | 0.545308 |
Target: 5'- uGUACGUguaguuguucgaGCGCaGCGCGuUCGCCGu- -3' miRNA: 3'- gCAUGUAg-----------CGCGaCGCGC-AGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 28709 | 0.72 | 0.243379 |
Target: 5'- gCGcGCGUUGCcguaCUGCGCGcCGCCGAGg -3' miRNA: 3'- -GCaUGUAGCGc---GACGCGCaGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 19163 | 0.7 | 0.298211 |
Target: 5'- cCGUGCAUC-CGCcgGCGCGgcUCGUCGGc -3' miRNA: 3'- -GCAUGUAGcGCGa-CGCGC--AGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 19132 | 0.7 | 0.337097 |
Target: 5'- --cGCAUCgccggGCGCuUGCGCGUCGUCGu- -3' miRNA: 3'- gcaUGUAG-----CGCG-ACGCGCAGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 27979 | 0.69 | 0.370777 |
Target: 5'- cCGUAcCGUCGCGCuugccguaacccUGCGCGgcgaCGCUGGu -3' miRNA: 3'- -GCAU-GUAGCGCG------------ACGCGCa---GCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 25643 | 0.68 | 0.397503 |
Target: 5'- aGUugAUCGCGCUGuCGC--UGCCGu- -3' miRNA: 3'- gCAugUAGCGCGAC-GCGcaGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6369 | 0.67 | 0.484613 |
Target: 5'- gCGUAuccCAUCG-GUUGCGCGUCguGCCGu- -3' miRNA: 3'- -GCAU---GUAGCgCGACGCGCAG--CGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 26472 | 0.68 | 0.435002 |
Target: 5'- aGUGcCAUa-CGCcGCGCGUCGCCGc- -3' miRNA: 3'- gCAU-GUAgcGCGaCGCGCAGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 20215 | 0.68 | 0.388457 |
Target: 5'- aGUGCuUUGCccgaCUGCGCGcCGCCGGc -3' miRNA: 3'- gCAUGuAGCGc---GACGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 6443 | 0.75 | 0.150374 |
Target: 5'- uCGUGCAUCGCGa-GCagGCaGUCGCCGAAc -3' miRNA: 3'- -GCAUGUAGCGCgaCG--CG-CAGCGGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 38017 | 0.67 | 0.444692 |
Target: 5'- gCGaACAUucucgaCGCGCUGCccGCGUCGCuCGGc -3' miRNA: 3'- -GCaUGUA------GCGCGACG--CGCAGCG-GCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 3555 | 0.74 | 0.172371 |
Target: 5'- aGUGC--CGCGCaGCGCGUCGgCCGAc -3' miRNA: 3'- gCAUGuaGCGCGaCGCGCAGC-GGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 42126 | 0.69 | 0.379548 |
Target: 5'- --aGCGUCGUGCUGCGCGacgaggcgugUCG-CGAGg -3' miRNA: 3'- gcaUGUAGCGCGACGCGC----------AGCgGCUU- -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 20982 | 0.67 | 0.444692 |
Target: 5'- --cGCGgcugCGCGcCUGCGCGUCgacguGCCGGc -3' miRNA: 3'- gcaUGUa---GCGC-GACGCGCAG-----CGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 46678 | 0.66 | 0.503131 |
Target: 5'- --aGCcUCGCGCgcagccaaggcgGCGCG-CGCCGAc -3' miRNA: 3'- gcaUGuAGCGCGa-----------CGCGCaGCGGCUu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 37407 | 0.74 | 0.18641 |
Target: 5'- aCGUGCAUCGCGUcGCGCGgccguccUCGUCGu- -3' miRNA: 3'- -GCAUGUAGCGCGaCGCGC-------AGCGGCuu -5' |
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24329 | 3' | -57.7 | NC_005263.2 | + | 45386 | 0.7 | 0.313335 |
Target: 5'- uCGUACGUgaugcacgCGCGCUGCGCaugcaccUGCCGAGc -3' miRNA: 3'- -GCAUGUA--------GCGCGACGCGca-----GCGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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