miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 47344 1.06 0.000779
Target:  5'- uCGUACAUCGCGCUGCGCGUCGCCGAAa -3'
miRNA:   3'- -GCAUGUAGCGCGACGCGCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 6443 0.75 0.150374
Target:  5'- uCGUGCAUCGCGa-GCagGCaGUCGCCGAAc -3'
miRNA:   3'- -GCAUGUAGCGCgaCG--CG-CAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 3555 0.74 0.172371
Target:  5'- aGUGC--CGCGCaGCGCGUCGgCCGAc -3'
miRNA:   3'- gCAUGuaGCGCGaCGCGCAGC-GGCUu -5'
24329 3' -57.7 NC_005263.2 + 22212 0.74 0.181949
Target:  5'- aCGUACGUCGCG--GC-CGUCGCCGGc -3'
miRNA:   3'- -GCAUGUAGCGCgaCGcGCAGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 37407 0.74 0.18641
Target:  5'- aCGUGCAUCGCGUcGCGCGgccguccUCGUCGu- -3'
miRNA:   3'- -GCAUGUAGCGCGaCGCGC-------AGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 44553 0.72 0.237148
Target:  5'- uCGgcCGaCGCGCUGCGCGgcacugCGCUGAu -3'
miRNA:   3'- -GCauGUaGCGCGACGCGCa-----GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 17476 0.72 0.239624
Target:  5'- uGUACGucaugaacgcccugaUCGCGCgcgGCGCGUCGaUCGAu -3'
miRNA:   3'- gCAUGU---------------AGCGCGa--CGCGCAGC-GGCUu -5'
24329 3' -57.7 NC_005263.2 + 28709 0.72 0.243379
Target:  5'- gCGcGCGUUGCcguaCUGCGCGcCGCCGAGg -3'
miRNA:   3'- -GCaUGUAGCGc---GACGCGCaGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 1181 0.71 0.276596
Target:  5'- uGUGCcUCGUGCUGCGCGgcagCGCg--- -3'
miRNA:   3'- gCAUGuAGCGCGACGCGCa---GCGgcuu -5'
24329 3' -57.7 NC_005263.2 + 19163 0.7 0.298211
Target:  5'- cCGUGCAUC-CGCcgGCGCGgcUCGUCGGc -3'
miRNA:   3'- -GCAUGUAGcGCGa-CGCGC--AGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 41184 0.7 0.313335
Target:  5'- uCGaUACGUugCGCGCUGUGCGUC-CUGAu -3'
miRNA:   3'- -GC-AUGUA--GCGCGACGCGCAGcGGCUu -5'
24329 3' -57.7 NC_005263.2 + 45386 0.7 0.313335
Target:  5'- uCGUACGUgaugcacgCGCGCUGCGCaugcaccUGCCGAGc -3'
miRNA:   3'- -GCAUGUA--------GCGCGACGCGca-----GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 19132 0.7 0.337097
Target:  5'- --cGCAUCgccggGCGCuUGCGCGUCGUCGu- -3'
miRNA:   3'- gcaUGUAG-----CGCG-ACGCGCAGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 34807 0.69 0.345304
Target:  5'- cCGUACAUCGacaacugGCUGCGCacgCGCCa-- -3'
miRNA:   3'- -GCAUGUAGCg------CGACGCGca-GCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 29018 0.69 0.345304
Target:  5'- aGUGCGUUGCGCacCGCGaCGCCGu- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 27979 0.69 0.370777
Target:  5'- cCGUAcCGUCGCGCuugccguaacccUGCGCGgcgaCGCUGGu -3'
miRNA:   3'- -GCAU-GUAGCGCG------------ACGCGCa---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 42126 0.69 0.379548
Target:  5'- --aGCGUCGUGCUGCGCGacgaggcgugUCG-CGAGg -3'
miRNA:   3'- gcaUGUAGCGCGACGCGC----------AGCgGCUU- -5'
24329 3' -57.7 NC_005263.2 + 20215 0.68 0.388457
Target:  5'- aGUGCuUUGCccgaCUGCGCGcCGCCGGc -3'
miRNA:   3'- gCAUGuAGCGc---GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 25643 0.68 0.397503
Target:  5'- aGUugAUCGCGCUGuCGC--UGCCGu- -3'
miRNA:   3'- gCAugUAGCGCGAC-GCGcaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 8737 0.68 0.406682
Target:  5'- gGUGCGUCGUaGaaGCGCGcCGCCGc- -3'
miRNA:   3'- gCAUGUAGCG-CgaCGCGCaGCGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.