miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24329 3' -57.7 NC_005263.2 + 19090 0.66 0.530401
Target:  5'- --gGCGUCGCGgUGCGCaacgcacugccggucGgccgCGCCGAg -3'
miRNA:   3'- gcaUGUAGCGCgACGCG---------------Ca---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 4894 0.66 0.505207
Target:  5'- uGUaGCG-CGCGCUGCGauagcgcgcCGUCGCCa-- -3'
miRNA:   3'- gCA-UGUaGCGCGACGC---------GCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 20215 0.68 0.388457
Target:  5'- aGUGCuUUGCccgaCUGCGCGcCGCCGGc -3'
miRNA:   3'- gCAUGuAGCGc---GACGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 42126 0.69 0.379548
Target:  5'- --aGCGUCGUGCUGCGCGacgaggcgugUCG-CGAGg -3'
miRNA:   3'- gcaUGUAGCGCGACGCGC----------AGCgGCUU- -5'
24329 3' -57.7 NC_005263.2 + 27979 0.69 0.370777
Target:  5'- cCGUAcCGUCGCGCuugccguaacccUGCGCGgcgaCGCUGGu -3'
miRNA:   3'- -GCAU-GUAGCGCG------------ACGCGCa---GCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 31254 0.66 0.536772
Target:  5'- ------cCGCGCgGCGCGgCGCCGGg -3'
miRNA:   3'- gcauguaGCGCGaCGCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 12177 0.66 0.547449
Target:  5'- aCGUAUAaCG-GCacGCGCGUCGCCa-- -3'
miRNA:   3'- -GCAUGUaGCgCGa-CGCGCAGCGGcuu -5'
24329 3' -57.7 NC_005263.2 + 1181 0.71 0.276596
Target:  5'- uGUGCcUCGUGCUGCGCGgcagCGCg--- -3'
miRNA:   3'- gCAUGuAGCGCGACGCGCa---GCGgcuu -5'
24329 3' -57.7 NC_005263.2 + 41184 0.7 0.313335
Target:  5'- uCGaUACGUugCGCGCUGUGCGUC-CUGAu -3'
miRNA:   3'- -GC-AUGUA--GCGCGACGCGCAGcGGCUu -5'
24329 3' -57.7 NC_005263.2 + 29018 0.69 0.345304
Target:  5'- aGUGCGUUGCGCacCGCGaCGCCGu- -3'
miRNA:   3'- gCAUGUAGCGCGacGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 45603 0.67 0.494862
Target:  5'- uGUACGUCGCGCccgaucucgagGCaGCGUCGaucgucaCGAAc -3'
miRNA:   3'- gCAUGUAGCGCGa----------CG-CGCAGCg------GCUU- -5'
24329 3' -57.7 NC_005263.2 + 32550 0.66 0.505207
Target:  5'- --gGCGUUcaGCGC-GCGCGUcugCGCCGAGa -3'
miRNA:   3'- gcaUGUAG--CGCGaCGCGCA---GCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 27128 0.66 0.515645
Target:  5'- aCGcGCAggCGCGCaGcCGCGUCGgCGAu -3'
miRNA:   3'- -GCaUGUa-GCGCGaC-GCGCAGCgGCUu -5'
24329 3' -57.7 NC_005263.2 + 6054 0.66 0.526169
Target:  5'- uCGUugGcggCGCGCUucaCGCG-CGCCGAc -3'
miRNA:   3'- -GCAugUa--GCGCGAc--GCGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 30673 0.66 0.547449
Target:  5'- aGUGCAUCcUGCaUGCGCGggcagGCCGGc -3'
miRNA:   3'- gCAUGUAGcGCG-ACGCGCag---CGGCUu -5'
24329 3' -57.7 NC_005263.2 + 9825 0.67 0.453516
Target:  5'- gCGUGCAUCacguugacgaacgGCGCgGCGCGcUUGCuCGAc -3'
miRNA:   3'- -GCAUGUAG-------------CGCGaCGCGC-AGCG-GCUu -5'
24329 3' -57.7 NC_005263.2 + 4208 0.68 0.425434
Target:  5'- aGUACG-CGCGCgucGaCGgGUCGUCGAGg -3'
miRNA:   3'- gCAUGUaGCGCGa--C-GCgCAGCGGCUU- -5'
24329 3' -57.7 NC_005263.2 + 18869 0.68 0.406682
Target:  5'- gCGUGCcucggCGCGCcGCuGCG-CGCCGAc -3'
miRNA:   3'- -GCAUGua---GCGCGaCG-CGCaGCGGCUu -5'
24329 3' -57.7 NC_005263.2 + 8737 0.68 0.406682
Target:  5'- gGUGCGUCGUaGaaGCGCGcCGCCGc- -3'
miRNA:   3'- gCAUGUAGCG-CgaCGCGCaGCGGCuu -5'
24329 3' -57.7 NC_005263.2 + 34807 0.69 0.345304
Target:  5'- cCGUACAUCGacaacugGCUGCGCacgCGCCa-- -3'
miRNA:   3'- -GCAUGUAGCg------CGACGCGca-GCGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.