miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 3' -56.6 NC_005264.1 + 2525 0.69 0.689766
Target:  5'- cGGGGgGCGacuuCCcGAGACGGGGGUUGc- -3'
miRNA:   3'- -CCCCgUGC----GGuCUCUGUCUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 3853 0.68 0.787456
Target:  5'- uGGGUccuGCGCCGGGGAUu-GGGCUGc- -3'
miRNA:   3'- cCCCG---UGCGGUCUCUGucUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 6180 0.68 0.796599
Target:  5'- uGGGGCACGCCGGucGCcauGGCc--- -3'
miRNA:   3'- -CCCCGUGCGGUCucUGucuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 6808 0.67 0.839889
Target:  5'- aGGGGaCGgucaggguguUGCCGGAGGCGGcGGCg--- -3'
miRNA:   3'- -CCCC-GU----------GCGGUCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 7994 0.67 0.839889
Target:  5'- cGGGC-CGCCauugcGGGGccgGCAGAGGCg--- -3'
miRNA:   3'- cCCCGuGCGG-----UCUC---UGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 16506 0.69 0.7398
Target:  5'- -aGGCACGCCGGcgcAGACGGAuGGUa--- -3'
miRNA:   3'- ccCCGUGCGGUC---UCUGUCU-CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 16567 0.68 0.778171
Target:  5'- uGGGCgGCGCCGG-GGCGGcGGCg--- -3'
miRNA:   3'- cCCCG-UGCGGUCuCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 18548 0.67 0.839889
Target:  5'- aGGGCGCGCCGGcgucAGuCGGAgcGGCa--- -3'
miRNA:   3'- cCCCGUGCGGUC----UCuGUCU--CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 25475 0.68 0.778171
Target:  5'- uGGGgGCGCCAGGcGuACGggaacGAGGCUAGGa -3'
miRNA:   3'- cCCCgUGCGGUCU-C-UGU-----CUCCGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 33671 0.71 0.597364
Target:  5'- cGGGUAUGaauCuGGGGCGGAGGCUGAc -3'
miRNA:   3'- cCCCGUGCg--GuCUCUGUCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 33946 0.68 0.759213
Target:  5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3'
miRNA:   3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 33998 0.69 0.720006
Target:  5'- cGGGCaagACGCCGGAGACgaugacgacgcGGGGGUa--- -3'
miRNA:   3'- cCCCG---UGCGGUCUCUG-----------UCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 34546 0.71 0.628213
Target:  5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3'
miRNA:   3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5'
24331 3' -56.6 NC_005264.1 + 39409 0.73 0.486605
Target:  5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3'
miRNA:   3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 43894 0.66 0.878417
Target:  5'- aGGGgGCGCCGGAGACGauagcGcGGCc--- -3'
miRNA:   3'- cCCCgUGCGGUCUCUGU-----CuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 45132 0.7 0.666273
Target:  5'- uGGGGCgaagaaccagacagGCGCCAcGAcGCGGAGGCa--- -3'
miRNA:   3'- -CCCCG--------------UGCGGU-CUcUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 48374 0.77 0.303099
Target:  5'- uGGGGCGCaGCCGGuAGACuGGGGCg--- -3'
miRNA:   3'- -CCCCGUG-CGGUC-UCUGuCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 54579 0.69 0.699907
Target:  5'- uGGGGCGCgacggGUCGGAGAUGGAGcuugaGCUAGu -3'
miRNA:   3'- -CCCCGUG-----CGGUCUCUGUCUC-----CGAUUu -5'
24331 3' -56.6 NC_005264.1 + 57858 0.69 0.699907
Target:  5'- -cGGUcgucaGCGCCAGAGACGGcGGCa--- -3'
miRNA:   3'- ccCCG-----UGCGGUCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 70059 0.67 0.831582
Target:  5'- aGGGGg--GUCGGGGAcCAGGGGCUGu- -3'
miRNA:   3'- -CCCCgugCGGUCUCU-GUCUCCGAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.