Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24331 | 3' | -56.6 | NC_005264.1 | + | 45132 | 0.7 | 0.666273 |
Target: 5'- uGGGGCgaagaaccagacagGCGCCAcGAcGCGGAGGCa--- -3' miRNA: 3'- -CCCCG--------------UGCGGU-CUcUGUCUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 93169 | 0.7 | 0.659089 |
Target: 5'- cGGGGCGCcgcuCCAGAcugGGCGGAGcaGCUGAGg -3' miRNA: 3'- -CCCCGUGc---GGUCU---CUGUCUC--CGAUUU- -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 34546 | 0.71 | 0.628213 |
Target: 5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3' miRNA: 3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 132769 | 0.71 | 0.617917 |
Target: 5'- cGGGCGCGgCGGcgccGACgAGGGGCUAAu -3' miRNA: 3'- cCCCGUGCgGUCu---CUG-UCUCCGAUUu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 33671 | 0.71 | 0.597364 |
Target: 5'- cGGGUAUGaauCuGGGGCGGAGGCUGAc -3' miRNA: 3'- cCCCGUGCg--GuCUCUGUCUCCGAUUu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 39409 | 0.73 | 0.486605 |
Target: 5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3' miRNA: 3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 91557 | 0.73 | 0.478017 |
Target: 5'- cGGGCGCgGCgGGGGGCAcGAGGCUu-- -3' miRNA: 3'- cCCCGUG-CGgUCUCUGU-CUCCGAuuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 48374 | 0.77 | 0.303099 |
Target: 5'- uGGGGCGCaGCCGGuAGACuGGGGCg--- -3' miRNA: 3'- -CCCCGUG-CGGUC-UCUGuCUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 16506 | 0.69 | 0.7398 |
Target: 5'- -aGGCACGCCGGcgcAGACGGAuGGUa--- -3' miRNA: 3'- ccCCGUGCGGUC---UCUGUCU-CCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 33946 | 0.68 | 0.759213 |
Target: 5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3' miRNA: 3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 146930 | 0.66 | 0.863633 |
Target: 5'- cGGGGCAguaGUUcguGGcGCAGAGGCUGGAu -3' miRNA: 3'- -CCCCGUg--CGGu--CUcUGUCUCCGAUUU- -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 131618 | 0.66 | 0.848004 |
Target: 5'- uGGGCGCGCgCGGAGAagaaCAGAuGGUc--- -3' miRNA: 3'- cCCCGUGCG-GUCUCU----GUCU-CCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 75156 | 0.66 | 0.848004 |
Target: 5'- aGGGcCACGCCAGAGuuguGCAGuAGcGCg--- -3' miRNA: 3'- cCCC-GUGCGGUCUC----UGUC-UC-CGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 102771 | 0.67 | 0.839889 |
Target: 5'- aGGGGCGgGCCAGuu-CGGuGGCc--- -3' miRNA: 3'- -CCCCGUgCGGUCucuGUCuCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 7994 | 0.67 | 0.839889 |
Target: 5'- cGGGC-CGCCauugcGGGGccgGCAGAGGCg--- -3' miRNA: 3'- cCCCGuGCGG-----UCUC---UGUCUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 6808 | 0.67 | 0.839889 |
Target: 5'- aGGGGaCGgucaggguguUGCCGGAGGCGGcGGCg--- -3' miRNA: 3'- -CCCC-GU----------GCGGUCUCUGUCuCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 70059 | 0.67 | 0.831582 |
Target: 5'- aGGGGg--GUCGGGGAcCAGGGGCUGu- -3' miRNA: 3'- -CCCCgugCGGUCUCU-GUCUCCGAUuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 6180 | 0.68 | 0.796599 |
Target: 5'- uGGGGCACGCCGGucGCcauGGCc--- -3' miRNA: 3'- -CCCCGUGCGGUCucUGucuCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 104487 | 0.68 | 0.778171 |
Target: 5'- -cGGCccCGCCAGAguacGACAGGGGCg--- -3' miRNA: 3'- ccCCGu-GCGGUCU----CUGUCUCCGauuu -5' |
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24331 | 3' | -56.6 | NC_005264.1 | + | 25475 | 0.68 | 0.778171 |
Target: 5'- uGGGgGCGCCAGGcGuACGggaacGAGGCUAGGa -3' miRNA: 3'- cCCCgUGCGGUCU-C-UGU-----CUCCGAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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