miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 3' -56.6 NC_005264.1 + 45132 0.7 0.666273
Target:  5'- uGGGGCgaagaaccagacagGCGCCAcGAcGCGGAGGCa--- -3'
miRNA:   3'- -CCCCG--------------UGCGGU-CUcUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 93169 0.7 0.659089
Target:  5'- cGGGGCGCcgcuCCAGAcugGGCGGAGcaGCUGAGg -3'
miRNA:   3'- -CCCCGUGc---GGUCU---CUGUCUC--CGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 34546 0.71 0.628213
Target:  5'- cGGGGUACGUgAGGGAagcGGGGcCUAGAa -3'
miRNA:   3'- -CCCCGUGCGgUCUCUgu-CUCC-GAUUU- -5'
24331 3' -56.6 NC_005264.1 + 132769 0.71 0.617917
Target:  5'- cGGGCGCGgCGGcgccGACgAGGGGCUAAu -3'
miRNA:   3'- cCCCGUGCgGUCu---CUG-UCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 33671 0.71 0.597364
Target:  5'- cGGGUAUGaauCuGGGGCGGAGGCUGAc -3'
miRNA:   3'- cCCCGUGCg--GuCUCUGUCUCCGAUUu -5'
24331 3' -56.6 NC_005264.1 + 39409 0.73 0.486605
Target:  5'- gGGGGCacugcgcugcucaGCGCCGGAGACAucgguuuugccGGGGCg--- -3'
miRNA:   3'- -CCCCG-------------UGCGGUCUCUGU-----------CUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 91557 0.73 0.478017
Target:  5'- cGGGCGCgGCgGGGGGCAcGAGGCUu-- -3'
miRNA:   3'- cCCCGUG-CGgUCUCUGU-CUCCGAuuu -5'
24331 3' -56.6 NC_005264.1 + 48374 0.77 0.303099
Target:  5'- uGGGGCGCaGCCGGuAGACuGGGGCg--- -3'
miRNA:   3'- -CCCCGUG-CGGUC-UCUGuCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 16506 0.69 0.7398
Target:  5'- -aGGCACGCCGGcgcAGACGGAuGGUa--- -3'
miRNA:   3'- ccCCGUGCGGUC---UCUGUCU-CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 33946 0.68 0.759213
Target:  5'- -uGGCGCGCCGGGaccgcgcccGAUAGGGGCc--- -3'
miRNA:   3'- ccCCGUGCGGUCU---------CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 146930 0.66 0.863633
Target:  5'- cGGGGCAguaGUUcguGGcGCAGAGGCUGGAu -3'
miRNA:   3'- -CCCCGUg--CGGu--CUcUGUCUCCGAUUU- -5'
24331 3' -56.6 NC_005264.1 + 131618 0.66 0.848004
Target:  5'- uGGGCGCGCgCGGAGAagaaCAGAuGGUc--- -3'
miRNA:   3'- cCCCGUGCG-GUCUCU----GUCU-CCGauuu -5'
24331 3' -56.6 NC_005264.1 + 75156 0.66 0.848004
Target:  5'- aGGGcCACGCCAGAGuuguGCAGuAGcGCg--- -3'
miRNA:   3'- cCCC-GUGCGGUCUC----UGUC-UC-CGauuu -5'
24331 3' -56.6 NC_005264.1 + 102771 0.67 0.839889
Target:  5'- aGGGGCGgGCCAGuu-CGGuGGCc--- -3'
miRNA:   3'- -CCCCGUgCGGUCucuGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 7994 0.67 0.839889
Target:  5'- cGGGC-CGCCauugcGGGGccgGCAGAGGCg--- -3'
miRNA:   3'- cCCCGuGCGG-----UCUC---UGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 6808 0.67 0.839889
Target:  5'- aGGGGaCGgucaggguguUGCCGGAGGCGGcGGCg--- -3'
miRNA:   3'- -CCCC-GU----------GCGGUCUCUGUCuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 70059 0.67 0.831582
Target:  5'- aGGGGg--GUCGGGGAcCAGGGGCUGu- -3'
miRNA:   3'- -CCCCgugCGGUCUCU-GUCUCCGAUuu -5'
24331 3' -56.6 NC_005264.1 + 6180 0.68 0.796599
Target:  5'- uGGGGCACGCCGGucGCcauGGCc--- -3'
miRNA:   3'- -CCCCGUGCGGUCucUGucuCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 104487 0.68 0.778171
Target:  5'- -cGGCccCGCCAGAguacGACAGGGGCg--- -3'
miRNA:   3'- ccCCGu-GCGGUCU----CUGUCUCCGauuu -5'
24331 3' -56.6 NC_005264.1 + 25475 0.68 0.778171
Target:  5'- uGGGgGCGCCAGGcGuACGggaacGAGGCUAGGa -3'
miRNA:   3'- cCCCgUGCGGUCU-C-UGU-----CUCCGAUUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.