Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 39568 | 0.68 | 0.994289 |
Target: 5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3' miRNA: 3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 159006 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 104169 | 0.76 | 0.815094 |
Target: 5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3' miRNA: 3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 6237 | 0.67 | 0.997482 |
Target: 5'- gGGUUCUgcgGCGGCCCCGcgGAuccuCAg -3' miRNA: 3'- -CCAGGGa--CGUCGGGGUuuUUuauuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 154836 | 0.67 | 0.997482 |
Target: 5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3' miRNA: 3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55901 | 0.67 | 0.997855 |
Target: 5'- --aUCCUGCGGCCgCCGcagcugucgaggaAAAAGUGACc -3' miRNA: 3'- ccaGGGACGUCGG-GGU-------------UUUUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 80587 | 0.67 | 0.997894 |
Target: 5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3' miRNA: 3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 91436 | 0.67 | 0.997894 |
Target: 5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3' miRNA: 3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 143582 | 0.67 | 0.998215 |
Target: 5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3' miRNA: 3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 161311 | 0.67 | 0.998551 |
Target: 5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3' miRNA: 3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 75199 | 0.66 | 0.998942 |
Target: 5'- aGGUCCC-GC-GCCCCAcgcggcuGCAu -3' miRNA: 3'- -CCAGGGaCGuCGGGGUuuuuuauUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 116709 | 0.66 | 0.999025 |
Target: 5'- aGGguugCCCUGUAGCgCCAAuaccAGUAuucuGCAg -3' miRNA: 3'- -CCa---GGGACGUCGgGGUUuu--UUAU----UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 50236 | 0.66 | 0.999025 |
Target: 5'- gGGUCCCgGUAGCCUguuu-GGUGGCc -3' miRNA: 3'- -CCAGGGaCGUCGGGguuuuUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 100455 | 0.66 | 0.999025 |
Target: 5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3' miRNA: 3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 114471 | 0.66 | 0.999156 |
Target: 5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3' miRNA: 3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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