Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 115301 | 0.69 | 0.993365 |
Target: 5'- cGUCCCgcGCAGCCCUuccuGAcgAGCu -3' miRNA: 3'- cCAGGGa-CGUCGGGGuuu-UUuaUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 23126 | 0.71 | 0.973438 |
Target: 5'- cGGUCCCuaaUGCucGGCCCauaAAGAAAUAAa- -3' miRNA: 3'- -CCAGGG---ACG--UCGGGg--UUUUUUAUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 38707 | 0.66 | 0.99936 |
Target: 5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3' miRNA: 3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 89859 | 0.67 | 0.997482 |
Target: 5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3' miRNA: 3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55466 | 0.69 | 0.988419 |
Target: 5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3' miRNA: 3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 9395 | 0.69 | 0.988419 |
Target: 5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3' miRNA: 3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 76195 | 0.72 | 0.95178 |
Target: 5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3' miRNA: 3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 157733 | 0.66 | 0.99936 |
Target: 5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3' miRNA: 3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 66089 | 0.66 | 0.999317 |
Target: 5'- aGUCUCUgggggGCuGCCCCGAAAacgaguacucugucAAUAGCGg -3' miRNA: 3'- cCAGGGA-----CGuCGGGGUUUU--------------UUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 20295 | 0.66 | 0.999207 |
Target: 5'- ---gCUUGCGGCCCCGAGGGGcUGAg- -3' miRNA: 3'- ccagGGACGUCGGGGUUUUUU-AUUgu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 159006 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 39568 | 0.68 | 0.994289 |
Target: 5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3' miRNA: 3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 98585 | 0.69 | 0.993365 |
Target: 5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3' miRNA: 3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 29593 | 0.69 | 0.992327 |
Target: 5'- -uUgCCUGCGGCUCCAGAucgaagcGUAGCGc -3' miRNA: 3'- ccAgGGACGUCGGGGUUUuu-----UAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 161311 | 0.67 | 0.998551 |
Target: 5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3' miRNA: 3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 75199 | 0.66 | 0.998942 |
Target: 5'- aGGUCCC-GC-GCCCCAcgcggcuGCAu -3' miRNA: 3'- -CCAGGGaCGuCGGGGUuuuuuauUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 116709 | 0.66 | 0.999025 |
Target: 5'- aGGguugCCCUGUAGCgCCAAuaccAGUAuucuGCAg -3' miRNA: 3'- -CCa---GGGACGUCGgGGUUuu--UUAU----UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 50236 | 0.66 | 0.999025 |
Target: 5'- gGGUCCCgGUAGCCUguuu-GGUGGCc -3' miRNA: 3'- -CCAGGGaCGUCGGGguuuuUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 100455 | 0.66 | 0.999025 |
Target: 5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3' miRNA: 3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 114471 | 0.66 | 0.999156 |
Target: 5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3' miRNA: 3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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