Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 162318 | 0.69 | 0.993365 |
Target: 5'- gGGUgCUCgGCGGCCCCAu-AAGUAuCAa -3' miRNA: 3'- -CCA-GGGaCGUCGGGGUuuUUUAUuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 115301 | 0.69 | 0.993365 |
Target: 5'- cGUCCCgcGCAGCCCUuccuGAcgAGCu -3' miRNA: 3'- cCAGGGa-CGUCGGGGuuu-UUuaUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 98585 | 0.69 | 0.993365 |
Target: 5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3' miRNA: 3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 39568 | 0.68 | 0.994289 |
Target: 5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3' miRNA: 3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 159006 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 39979 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 109917 | 0.68 | 0.996455 |
Target: 5'- cGG-CCaUGCAauGCCCCucGAAGUGGCGg -3' miRNA: 3'- -CCaGGgACGU--CGGGGuuUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 35810 | 0.67 | 0.997482 |
Target: 5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3' miRNA: 3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 63977 | 0.67 | 0.997482 |
Target: 5'- --aCCCcGCuaccgcuuGCCCCAaAAGAAUAACAg -3' miRNA: 3'- ccaGGGaCGu-------CGGGGU-UUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 89859 | 0.67 | 0.997482 |
Target: 5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3' miRNA: 3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 154836 | 0.67 | 0.997482 |
Target: 5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3' miRNA: 3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 6237 | 0.67 | 0.997482 |
Target: 5'- gGGUUCUgcgGCGGCCCCGcgGAuccuCAg -3' miRNA: 3'- -CCAGGGa--CGUCGGGGUuuUUuauuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55901 | 0.67 | 0.997855 |
Target: 5'- --aUCCUGCGGCCgCCGcagcugucgaggaAAAAGUGACc -3' miRNA: 3'- ccaGGGACGUCGG-GGU-------------UUUUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 91436 | 0.67 | 0.997894 |
Target: 5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3' miRNA: 3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 80587 | 0.67 | 0.997894 |
Target: 5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3' miRNA: 3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 69771 | 0.67 | 0.998182 |
Target: 5'- aGGUCgCC-GCGGCCCCucccgc-AGCAg -3' miRNA: 3'- -CCAG-GGaCGUCGGGGuuuuuuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 143582 | 0.67 | 0.998215 |
Target: 5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3' miRNA: 3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 161311 | 0.67 | 0.998551 |
Target: 5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3' miRNA: 3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 109645 | 0.67 | 0.998551 |
Target: 5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3' miRNA: 3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 42284 | 0.67 | 0.998551 |
Target: 5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3' miRNA: 3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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