miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 161274 1.13 0.009179
Target:  5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3'
miRNA:   3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 104169 0.76 0.815094
Target:  5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3'
miRNA:   3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5'
24332 3' -48.4 NC_005264.1 + 42170 0.75 0.881879
Target:  5'- uGGUCCCUGUAGCUCUucAGGAUuuccACGa -3'
miRNA:   3'- -CCAGGGACGUCGGGGuuUUUUAu---UGU- -5'
24332 3' -48.4 NC_005264.1 + 76195 0.72 0.95178
Target:  5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3'
miRNA:   3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 144852 0.71 0.97049
Target:  5'- aGUCCCUGgGGCCUaGGGGAAUAAa- -3'
miRNA:   3'- cCAGGGACgUCGGGgUUUUUUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 10176 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 23126 0.71 0.973438
Target:  5'- cGGUCCCuaaUGCucGGCCCauaAAGAAAUAAa- -3'
miRNA:   3'- -CCAGGG---ACG--UCGGGg--UUUUUUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 129203 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 120539 0.7 0.980998
Target:  5'- cGGcagCCCUGCgacGGCCCCGGAAGc----- -3'
miRNA:   3'- -CCa--GGGACG---UCGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 45414 0.7 0.985057
Target:  5'- cGGcgCCCUGCgcgccgcgacAGCCCCGAuagcGUAAUAg -3'
miRNA:   3'- -CCa-GGGACG----------UCGGGGUUuuu-UAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 25885 0.7 0.98682
Target:  5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3'
miRNA:   3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 55466 0.69 0.988419
Target:  5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3'
miRNA:   3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 9395 0.69 0.988419
Target:  5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3'
miRNA:   3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 91125 0.69 0.989863
Target:  5'- uGG-CCgaCUGCAGCCCCAcgcGAGAA-AGCGu -3'
miRNA:   3'- -CCaGG--GACGUCGGGGU---UUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 5353 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 124380 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 57709 0.69 0.989863
Target:  5'- --cCCCUGCAGCuCCCGAAu------- -3'
miRNA:   3'- ccaGGGACGUCG-GGGUUUuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 63173 0.69 0.991162
Target:  5'- --aCCCUGCcgcgugGGCCCCGAAAAGc---- -3'
miRNA:   3'- ccaGGGACG------UCGGGGUUUUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 76814 0.69 0.992327
Target:  5'- aGGUUCCUgGCGGCCUCGuuGAAa---- -3'
miRNA:   3'- -CCAGGGA-CGUCGGGGUuuUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 29593 0.69 0.992327
Target:  5'- -uUgCCUGCGGCUCCAGAucgaagcGUAGCGc -3'
miRNA:   3'- ccAgGGACGUCGGGGUUUuu-----UAUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.