miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 143582 0.67 0.998215
Target:  5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3'
miRNA:   3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 39568 0.68 0.994289
Target:  5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3'
miRNA:   3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5'
24332 3' -48.4 NC_005264.1 + 159006 0.68 0.995105
Target:  5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3'
miRNA:   3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 89859 0.67 0.997482
Target:  5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3'
miRNA:   3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 6237 0.67 0.997482
Target:  5'- gGGUUCUgcgGCGGCCCCGcgGAuccuCAg -3'
miRNA:   3'- -CCAGGGa--CGUCGGGGUuuUUuauuGU- -5'
24332 3' -48.4 NC_005264.1 + 154836 0.67 0.997482
Target:  5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3'
miRNA:   3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 55901 0.67 0.997855
Target:  5'- --aUCCUGCGGCCgCCGcagcugucgaggaAAAAGUGACc -3'
miRNA:   3'- ccaGGGACGUCGG-GGU-------------UUUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 80587 0.67 0.997894
Target:  5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3'
miRNA:   3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 91436 0.67 0.997894
Target:  5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3'
miRNA:   3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 98585 0.69 0.993365
Target:  5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3'
miRNA:   3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5'
24332 3' -48.4 NC_005264.1 + 29593 0.69 0.992327
Target:  5'- -uUgCCUGCGGCUCCAGAucgaagcGUAGCGc -3'
miRNA:   3'- ccAgGGACGUCGGGGUUUuu-----UAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 63173 0.69 0.991162
Target:  5'- --aCCCUGCcgcgugGGCCCCGAAAAGc---- -3'
miRNA:   3'- ccaGGGACG------UCGGGGUUUUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 42170 0.75 0.881879
Target:  5'- uGGUCCCUGUAGCUCUucAGGAUuuccACGa -3'
miRNA:   3'- -CCAGGGACGUCGGGGuuUUUUAu---UGU- -5'
24332 3' -48.4 NC_005264.1 + 76195 0.72 0.95178
Target:  5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3'
miRNA:   3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 129203 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 25885 0.7 0.98682
Target:  5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3'
miRNA:   3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 9395 0.69 0.988419
Target:  5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3'
miRNA:   3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 55466 0.69 0.988419
Target:  5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3'
miRNA:   3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 57709 0.69 0.989863
Target:  5'- --cCCCUGCAGCuCCCGAAu------- -3'
miRNA:   3'- ccaGGGACGUCG-GGGUUUuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 124380 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.