miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 75199 0.66 0.998942
Target:  5'- aGGUCCC-GC-GCCCCAcgcggcuGCAu -3'
miRNA:   3'- -CCAGGGaCGuCGGGGUuuuuuauUGU- -5'
24332 3' -48.4 NC_005264.1 + 129203 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 9395 0.69 0.988419
Target:  5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3'
miRNA:   3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 25885 0.7 0.98682
Target:  5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3'
miRNA:   3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 55466 0.69 0.988419
Target:  5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3'
miRNA:   3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 55901 0.67 0.997855
Target:  5'- --aUCCUGCGGCCgCCGcagcugucgaggaAAAAGUGACc -3'
miRNA:   3'- ccaGGGACGUCGG-GGU-------------UUUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 80587 0.67 0.997894
Target:  5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3'
miRNA:   3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 91436 0.67 0.997894
Target:  5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3'
miRNA:   3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 143582 0.67 0.998215
Target:  5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3'
miRNA:   3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 161311 0.67 0.998551
Target:  5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3'
miRNA:   3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 42170 0.75 0.881879
Target:  5'- uGGUCCCUGUAGCUCUucAGGAUuuccACGa -3'
miRNA:   3'- -CCAGGGACGUCGGGGuuUUUUAu---UGU- -5'
24332 3' -48.4 NC_005264.1 + 116709 0.66 0.999025
Target:  5'- aGGguugCCCUGUAGCgCCAAuaccAGUAuucuGCAg -3'
miRNA:   3'- -CCa---GGGACGUCGgGGUUuu--UUAU----UGU- -5'
24332 3' -48.4 NC_005264.1 + 50236 0.66 0.999025
Target:  5'- gGGUCCCgGUAGCCUguuu-GGUGGCc -3'
miRNA:   3'- -CCAGGGaCGUCGGGguuuuUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 100455 0.66 0.999025
Target:  5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3'
miRNA:   3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5'
24332 3' -48.4 NC_005264.1 + 114471 0.66 0.999156
Target:  5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3'
miRNA:   3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 20295 0.66 0.999207
Target:  5'- ---gCUUGCGGCCCCGAGGGGcUGAg- -3'
miRNA:   3'- ccagGGACGUCGGGGUUUUUU-AUUgu -5'
24332 3' -48.4 NC_005264.1 + 66089 0.66 0.999317
Target:  5'- aGUCUCUgggggGCuGCCCCGAAAacgaguacucugucAAUAGCGg -3'
miRNA:   3'- cCAGGGA-----CGuCGGGGUUUU--------------UUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 157733 0.66 0.99936
Target:  5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3'
miRNA:   3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 89245 0.66 0.999486
Target:  5'- ---gCCUGCGGCCCCAc--------- -3'
miRNA:   3'- ccagGGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 118992 0.66 0.999486
Target:  5'- -uUCCCcgcgGCAGCCCCcuucuuuAUAACc -3'
miRNA:   3'- ccAGGGa---CGUCGGGGuuuuu--UAUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.