Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 143582 | 0.67 | 0.998215 |
Target: 5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3' miRNA: 3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 39568 | 0.68 | 0.994289 |
Target: 5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3' miRNA: 3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 159006 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 89859 | 0.67 | 0.997482 |
Target: 5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3' miRNA: 3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 6237 | 0.67 | 0.997482 |
Target: 5'- gGGUUCUgcgGCGGCCCCGcgGAuccuCAg -3' miRNA: 3'- -CCAGGGa--CGUCGGGGUuuUUuauuGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 154836 | 0.67 | 0.997482 |
Target: 5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3' miRNA: 3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55901 | 0.67 | 0.997855 |
Target: 5'- --aUCCUGCGGCCgCCGcagcugucgaggaAAAAGUGACc -3' miRNA: 3'- ccaGGGACGUCGG-GGU-------------UUUUUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 80587 | 0.67 | 0.997894 |
Target: 5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3' miRNA: 3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 91436 | 0.67 | 0.997894 |
Target: 5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3' miRNA: 3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 98585 | 0.69 | 0.993365 |
Target: 5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3' miRNA: 3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 29593 | 0.69 | 0.992327 |
Target: 5'- -uUgCCUGCGGCUCCAGAucgaagcGUAGCGc -3' miRNA: 3'- ccAgGGACGUCGGGGUUUuu-----UAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 63173 | 0.69 | 0.991162 |
Target: 5'- --aCCCUGCcgcgugGGCCCCGAAAAGc---- -3' miRNA: 3'- ccaGGGACG------UCGGGGUUUUUUauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 42170 | 0.75 | 0.881879 |
Target: 5'- uGGUCCCUGUAGCUCUucAGGAUuuccACGa -3' miRNA: 3'- -CCAGGGACGUCGGGGuuUUUUAu---UGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 76195 | 0.72 | 0.95178 |
Target: 5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3' miRNA: 3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 129203 | 0.71 | 0.973438 |
Target: 5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3' miRNA: 3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 25885 | 0.7 | 0.98682 |
Target: 5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3' miRNA: 3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 9395 | 0.69 | 0.988419 |
Target: 5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3' miRNA: 3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 55466 | 0.69 | 0.988419 |
Target: 5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3' miRNA: 3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 57709 | 0.69 | 0.989863 |
Target: 5'- --cCCCUGCAGCuCCCGAAu------- -3' miRNA: 3'- ccaGGGACGUCG-GGGUUUuuuauugu -5' |
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24332 | 3' | -48.4 | NC_005264.1 | + | 124380 | 0.69 | 0.989863 |
Target: 5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3' miRNA: 3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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