miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 129203 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 25885 0.7 0.98682
Target:  5'- --aCCCUGCGuagauugcgauGCCCCAGGcgaacAGAUGGCGg -3'
miRNA:   3'- ccaGGGACGU-----------CGGGGUUU-----UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 9395 0.69 0.988419
Target:  5'- aGGUCCUcgUGCAGCgCCA----AUGACu -3'
miRNA:   3'- -CCAGGG--ACGUCGgGGUuuuuUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 55466 0.69 0.988419
Target:  5'- cGUCCCuucUGUuacGCCCgCGAGAAAUAAUAg -3'
miRNA:   3'- cCAGGG---ACGu--CGGG-GUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 57709 0.69 0.989863
Target:  5'- --cCCCUGCAGCuCCCGAAu------- -3'
miRNA:   3'- ccaGGGACGUCG-GGGUUUuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 124380 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 89859 0.67 0.997482
Target:  5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3'
miRNA:   3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 159006 0.68 0.995105
Target:  5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3'
miRNA:   3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 39568 0.68 0.994289
Target:  5'- -aUCCCccGCGGgCCCAGAGAGUAu-- -3'
miRNA:   3'- ccAGGGa-CGUCgGGGUUUUUUAUugu -5'
24332 3' -48.4 NC_005264.1 + 98585 0.69 0.993365
Target:  5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3'
miRNA:   3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5'
24332 3' -48.4 NC_005264.1 + 29593 0.69 0.992327
Target:  5'- -uUgCCUGCGGCUCCAGAucgaagcGUAGCGc -3'
miRNA:   3'- ccAgGGACGUCGGGGUUUuu-----UAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 63173 0.69 0.991162
Target:  5'- --aCCCUGCcgcgugGGCCCCGAAAAGc---- -3'
miRNA:   3'- ccaGGGACG------UCGGGGUUUUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 69771 0.67 0.998182
Target:  5'- aGGUCgCC-GCGGCCCCucccgc-AGCAg -3'
miRNA:   3'- -CCAG-GGaCGUCGGGGuuuuuuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 16789 0.67 0.998551
Target:  5'- cGGUCUCUGUGGCCaCU-----GUGACGu -3'
miRNA:   3'- -CCAGGGACGUCGG-GGuuuuuUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 42284 0.67 0.998551
Target:  5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3'
miRNA:   3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 109645 0.67 0.998551
Target:  5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3'
miRNA:   3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5'
24332 3' -48.4 NC_005264.1 + 38707 0.66 0.99936
Target:  5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3'
miRNA:   3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 84498 0.66 0.99936
Target:  5'- cGUCCgCUGCAucuCCgCGAGAGAUGAUg -3'
miRNA:   3'- cCAGG-GACGUc--GGgGUUUUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 120607 0.66 0.99936
Target:  5'- uGUCCCUGCcgcuguuuAGCcgccucggaaaCCCGGAAAAggcgGACAc -3'
miRNA:   3'- cCAGGGACG--------UCG-----------GGGUUUUUUa---UUGU- -5'
24332 3' -48.4 NC_005264.1 + 161274 1.13 0.009179
Target:  5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3'
miRNA:   3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.