miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 63173 0.69 0.991162
Target:  5'- --aCCCUGCcgcgugGGCCCCGAAAAGc---- -3'
miRNA:   3'- ccaGGGACG------UCGGGGUUUUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 63977 0.67 0.997482
Target:  5'- --aCCCcGCuaccgcuuGCCCCAaAAGAAUAACAg -3'
miRNA:   3'- ccaGGGaCGu-------CGGGGU-UUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 66089 0.66 0.999317
Target:  5'- aGUCUCUgggggGCuGCCCCGAAAacgaguacucugucAAUAGCGg -3'
miRNA:   3'- cCAGGGA-----CGuCGGGGUUUU--------------UUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 69771 0.67 0.998182
Target:  5'- aGGUCgCC-GCGGCCCCucccgc-AGCAg -3'
miRNA:   3'- -CCAG-GGaCGUCGGGGuuuuuuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 75199 0.66 0.998942
Target:  5'- aGGUCCC-GC-GCCCCAcgcggcuGCAu -3'
miRNA:   3'- -CCAGGGaCGuCGGGGUuuuuuauUGU- -5'
24332 3' -48.4 NC_005264.1 + 75948 0.66 0.999486
Target:  5'- uGGUCUCUaucGCGGCCgCCGccuguGAGGAaAGCAu -3'
miRNA:   3'- -CCAGGGA---CGUCGG-GGU-----UUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 76195 0.72 0.95178
Target:  5'- uGUCCCccGCGGCgCCCAAcgcagaaGAGGUGGCGa -3'
miRNA:   3'- cCAGGGa-CGUCG-GGGUU-------UUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 76814 0.69 0.992327
Target:  5'- aGGUUCCUgGCGGCCUCGuuGAAa---- -3'
miRNA:   3'- -CCAGGGA-CGUCGGGGUuuUUUauugu -5'
24332 3' -48.4 NC_005264.1 + 80587 0.67 0.997894
Target:  5'- cGGUgcCgCCUGUcgcgAGCCCCGAAAGcaAACGa -3'
miRNA:   3'- -CCA--G-GGACG----UCGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 84498 0.66 0.99936
Target:  5'- cGUCCgCUGCAucuCCgCGAGAGAUGAUg -3'
miRNA:   3'- cCAGG-GACGUc--GGgGUUUUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 89245 0.66 0.999486
Target:  5'- ---gCCUGCGGCCCCAc--------- -3'
miRNA:   3'- ccagGGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 89859 0.67 0.997482
Target:  5'- uGUCCCUGUcuauaggcuGCCCCAAAGGc----- -3'
miRNA:   3'- cCAGGGACGu--------CGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 91125 0.69 0.989863
Target:  5'- uGG-CCgaCUGCAGCCCCAcgcGAGAA-AGCGu -3'
miRNA:   3'- -CCaGG--GACGUCGGGGU---UUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 91436 0.67 0.997894
Target:  5'- uGGUCCa--UGGCCCUAGAGgcGAUGACGc -3'
miRNA:   3'- -CCAGGgacGUCGGGGUUUU--UUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 98585 0.69 0.993365
Target:  5'- cGGcgCCC-GCAGCCCCAGuauGUuugccGACAu -3'
miRNA:   3'- -CCa-GGGaCGUCGGGGUUuuuUA-----UUGU- -5'
24332 3' -48.4 NC_005264.1 + 100455 0.66 0.999025
Target:  5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3'
miRNA:   3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5'
24332 3' -48.4 NC_005264.1 + 104169 0.76 0.815094
Target:  5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3'
miRNA:   3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5'
24332 3' -48.4 NC_005264.1 + 109645 0.67 0.998551
Target:  5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3'
miRNA:   3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5'
24332 3' -48.4 NC_005264.1 + 109917 0.68 0.996455
Target:  5'- cGG-CCaUGCAauGCCCCucGAAGUGGCGg -3'
miRNA:   3'- -CCaGGgACGU--CGGGGuuUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 114471 0.66 0.999156
Target:  5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3'
miRNA:   3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.