Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24333 | 3' | -57.7 | NC_005264.1 | + | 23108 | 0.69 | 0.626265 |
Target: 5'- --uGCCGCCCGCCuCCCAacgaGCgAGAg-- -3' miRNA: 3'- uauCGGCGGGUGG-GGGUg---UG-UCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 9556 | 0.69 | 0.615963 |
Target: 5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3' miRNA: 3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 116235 | 0.69 | 0.615963 |
Target: 5'- -gAGCCGUCCuCgCCCCGCAgGGAc-- -3' miRNA: 3'- uaUCGGCGGGuG-GGGGUGUgUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 75544 | 0.68 | 0.698044 |
Target: 5'- -gGGCCGCguaCGCUCCCguaACGCGGAUg- -3' miRNA: 3'- uaUCGGCGg--GUGGGGG---UGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 146278 | 0.68 | 0.69703 |
Target: 5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3' miRNA: 3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 146684 | 0.68 | 0.698044 |
Target: 5'- uUAGCCGCCCcuugcaACCCCuCGCGCu----- -3' miRNA: 3'- uAUCGGCGGG------UGGGG-GUGUGucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 158983 | 0.68 | 0.687886 |
Target: 5'- -gGGCaGCCCAauCCCCgGCGCAGGa-- -3' miRNA: 3'- uaUCGgCGGGU--GGGGgUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 109514 | 0.68 | 0.715178 |
Target: 5'- -gGGCUGCCCcugcuggccaagcaGCCCCUGgGCAGAc-- -3' miRNA: 3'- uaUCGGCGGG--------------UGGGGGUgUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 33305 | 0.68 | 0.698044 |
Target: 5'- --cGCCuaaGCCCACgCCCGCAguGGUUc -3' miRNA: 3'- uauCGG---CGGGUGgGGGUGUguCUAAu -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 125805 | 0.68 | 0.718181 |
Target: 5'- --uGCCGUgU-CCCCCGCACGGAg-- -3' miRNA: 3'- uauCGGCGgGuGGGGGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 159471 | 0.68 | 0.698044 |
Target: 5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3' miRNA: 3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 51429 | 0.68 | 0.718181 |
Target: 5'- -gAGCCGCCguCGCCCCCuccguccuCAgAGAUg- -3' miRNA: 3'- uaUCGGCGG--GUGGGGGu-------GUgUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 94591 | 0.68 | 0.681768 |
Target: 5'- gAUGGCaucgaggaagacaaGCCCGCCgCCgGCGCGGAUa- -3' miRNA: 3'- -UAUCGg-------------CGGGUGG-GGgUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 159844 | 0.68 | 0.677682 |
Target: 5'- -gAGCCGCCgGCCCagucggcgcUCGCAUGGAUUc -3' miRNA: 3'- uaUCGGCGGgUGGG---------GGUGUGUCUAAu -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 146664 | 0.68 | 0.698044 |
Target: 5'- --uGCCGCgaCCgACCUCCGCGCAGGg-- -3' miRNA: 3'- uauCGGCG--GG-UGGGGGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 40444 | 0.68 | 0.698044 |
Target: 5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3' miRNA: 3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 71104 | 0.67 | 0.728143 |
Target: 5'- -cAGCCGCCCucgGCCCUgGugaGCAGAUa- -3' miRNA: 3'- uaUCGGCGGG---UGGGGgUg--UGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 159222 | 0.67 | 0.767054 |
Target: 5'- -cAGCgCGCCCGCCCUCGCGg------ -3' miRNA: 3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 59082 | 0.67 | 0.747804 |
Target: 5'- -cGGCCGCCCGCCUCaGCAU-GAa-- -3' miRNA: 3'- uaUCGGCGGGUGGGGgUGUGuCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 7102 | 0.67 | 0.766102 |
Target: 5'- -aGGCgGCCCAccauaacCCCCCGCGCGu---- -3' miRNA: 3'- uaUCGgCGGGU-------GGGGGUGUGUcuaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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