miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 51429 0.68 0.718181
Target:  5'- -gAGCCGCCguCGCCCCCuccguccuCAgAGAUg- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGu-------GUgUCUAau -5'
24333 3' -57.7 NC_005264.1 + 52706 0.77 0.255482
Target:  5'- --cGCCGCCCGCCCCCaaaaGCGCGGc--- -3'
miRNA:   3'- uauCGGCGGGUGGGGG----UGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 54375 0.67 0.73802
Target:  5'- --cGCgGCCaccggAUCCCCGCGCGGAUa- -3'
miRNA:   3'- uauCGgCGGg----UGGGGGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 56154 0.69 0.646876
Target:  5'- uUGGCCGCUuuuuCGCaCUCCGCGCGGAg-- -3'
miRNA:   3'- uAUCGGCGG----GUG-GGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 59082 0.67 0.747804
Target:  5'- -cGGCCGCCCGCCUCaGCAU-GAa-- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 69778 0.66 0.830117
Target:  5'- --cGCgGCCC-CUCCCGCAgCAGAc-- -3'
miRNA:   3'- uauCGgCGGGuGGGGGUGU-GUCUaau -5'
24333 3' -57.7 NC_005264.1 + 69844 0.71 0.494314
Target:  5'- -aGGCCGCCCugcuuggggcaucGCCCCUACgGCGGAc-- -3'
miRNA:   3'- uaUCGGCGGG-------------UGGGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 71104 0.67 0.728143
Target:  5'- -cAGCCGCCCucgGCCCUgGugaGCAGAUa- -3'
miRNA:   3'- uaUCGGCGGG---UGGGGgUg--UGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 72132 0.67 0.757485
Target:  5'- --cGCCGCCUGCCggauaCCACACGGu--- -3'
miRNA:   3'- uauCGGCGGGUGGg----GGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 75192 0.66 0.830117
Target:  5'- --uGCCGCCagguccCGCgCCCCACGCGGc--- -3'
miRNA:   3'- uauCGGCGG------GUG-GGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 75544 0.68 0.698044
Target:  5'- -gGGCCGCguaCGCUCCCguaACGCGGAUg- -3'
miRNA:   3'- uaUCGGCGg--GUGGGGG---UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 76623 0.7 0.605673
Target:  5'- -cGGCCGCCCACgagCACGCAGAg-- -3'
miRNA:   3'- uaUCGGCGGGUGgggGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 79668 0.66 0.794081
Target:  5'- --uGCCGCugacaaauucuccCCAUCCCCGCgACAGAc-- -3'
miRNA:   3'- uauCGGCG-------------GGUGGGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 81043 0.66 0.794992
Target:  5'- --cGCCGUCUACCCUCACugGcGcgUGg -3'
miRNA:   3'- uauCGGCGGGUGGGGGUGugU-CuaAU- -5'
24333 3' -57.7 NC_005264.1 + 82967 0.67 0.73802
Target:  5'- --cGCCGCCgCGCCCCCgugacgaagguACGguGAUa- -3'
miRNA:   3'- uauCGGCGG-GUGGGGG-----------UGUguCUAau -5'
24333 3' -57.7 NC_005264.1 + 86342 0.67 0.757485
Target:  5'- -cGGUCGCCUAuucCCCCCgACAgAGAUg- -3'
miRNA:   3'- uaUCGGCGGGU---GGGGG-UGUgUCUAau -5'
24333 3' -57.7 NC_005264.1 + 88348 0.66 0.812888
Target:  5'- cUGGCCGCCUuuggcGCUCUCGCAacCAGAa-- -3'
miRNA:   3'- uAUCGGCGGG-----UGGGGGUGU--GUCUaau -5'
24333 3' -57.7 NC_005264.1 + 89746 0.7 0.599507
Target:  5'- cGUAGCCGauCCCACCCgucgaaguagagaugCCGCGCGGGc-- -3'
miRNA:   3'- -UAUCGGC--GGGUGGG---------------GGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 94591 0.68 0.681768
Target:  5'- gAUGGCaucgaggaagacaaGCCCGCCgCCgGCGCGGAUa- -3'
miRNA:   3'- -UAUCGg-------------CGGGUGG-GGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 95674 0.71 0.534593
Target:  5'- -aGGCCGCcauCCACCCCUucguCACAGGg-- -3'
miRNA:   3'- uaUCGGCG---GGUGGGGGu---GUGUCUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.