miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 7102 0.67 0.766102
Target:  5'- -aGGCgGCCCAccauaacCCCCCGCGCGu---- -3'
miRNA:   3'- uaUCGgCGGGU-------GGGGGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 7160 0.67 0.747804
Target:  5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3'
miRNA:   3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 7577 0.72 0.466677
Target:  5'- --cGCCGCCUACCCCgCGCcgcuGCGGAg-- -3'
miRNA:   3'- uauCGGCGGGUGGGG-GUG----UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 9556 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 11441 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 12137 0.67 0.767054
Target:  5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3'
miRNA:   3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 12271 0.77 0.231826
Target:  5'- aAUGGCCGUCCGCCCCCACcccaACGGc--- -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUG----UGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 12904 0.66 0.785816
Target:  5'- -gAGCCGCCCGgCCUCGCAg------ -3'
miRNA:   3'- uaUCGGCGGGUgGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 16952 0.66 0.830117
Target:  5'- -cAGCuCGCCagCAUCCCCACgagaGCAGAa-- -3'
miRNA:   3'- uaUCG-GCGG--GUGGGGGUG----UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 23108 0.69 0.626265
Target:  5'- --uGCCGCCCGCCuCCCAacgaGCgAGAg-- -3'
miRNA:   3'- uauCGGCGGGUGG-GGGUg---UG-UCUaau -5'
24333 3' -57.7 NC_005264.1 + 31695 0.66 0.82159
Target:  5'- -gGGCUGCCCGCCaaagguCgCGCGCGGGg-- -3'
miRNA:   3'- uaUCGGCGGGUGG------GgGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 33305 0.68 0.698044
Target:  5'- --cGCCuaaGCCCACgCCCGCAguGGUUc -3'
miRNA:   3'- uauCGG---CGGGUGgGGGUGUguCUAAu -5'
24333 3' -57.7 NC_005264.1 + 37337 0.66 0.830117
Target:  5'- gAUGGCCGCgCACCCCgACGu------ -3'
miRNA:   3'- -UAUCGGCGgGUGGGGgUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 38515 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 38753 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 39067 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 39136 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 40195 0.67 0.767054
Target:  5'- -cAGCgCGCCCGCCCUCGCGg------ -3'
miRNA:   3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 40444 0.68 0.698044
Target:  5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3'
miRNA:   3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 41037 0.66 0.812888
Target:  5'- -gGGCCGaCCACuCCCCAgACGGu--- -3'
miRNA:   3'- uaUCGGCgGGUG-GGGGUgUGUCuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.