miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 130468 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146664 0.68 0.698044
Target:  5'- --uGCCGCgaCCgACCUCCGCGCAGGg-- -3'
miRNA:   3'- uauCGGCG--GG-UGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 159471 0.68 0.698044
Target:  5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3'
miRNA:   3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 109514 0.68 0.715178
Target:  5'- -gGGCUGCCCcugcuggccaagcaGCCCCUGgGCAGAc-- -3'
miRNA:   3'- uaUCGGCGGG--------------UGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 51429 0.68 0.718181
Target:  5'- -gAGCCGCCguCGCCCCCuccguccuCAgAGAUg- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGu-------GUgUCUAau -5'
24333 3' -57.7 NC_005264.1 + 71104 0.67 0.728143
Target:  5'- -cAGCCGCCCucgGCCCUgGugaGCAGAUa- -3'
miRNA:   3'- uaUCGGCGGG---UGGGGgUg--UGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 54375 0.67 0.73802
Target:  5'- --cGCgGCCaccggAUCCCCGCGCGGAUa- -3'
miRNA:   3'- uauCGgCGGg----UGGGGGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 157542 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 82967 0.67 0.73802
Target:  5'- --cGCCGCCgCGCCCCCgugacgaagguACGguGAUa- -3'
miRNA:   3'- uauCGGCGG-GUGGGGG-----------UGUguCUAau -5'
24333 3' -57.7 NC_005264.1 + 33305 0.68 0.698044
Target:  5'- --cGCCuaaGCCCACgCCCGCAguGGUUc -3'
miRNA:   3'- uauCGG---CGGGUGgGGGUGUguCUAAu -5'
24333 3' -57.7 NC_005264.1 + 94591 0.68 0.681768
Target:  5'- gAUGGCaucgaggaagacaaGCCCGCCgCCgGCGCGGAUa- -3'
miRNA:   3'- -UAUCGg-------------CGGGUGG-GGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 23108 0.69 0.626265
Target:  5'- --uGCCGCCCGCCuCCCAacgaGCgAGAg-- -3'
miRNA:   3'- uauCGGCGGGUGG-GGGUg---UG-UCUaau -5'
24333 3' -57.7 NC_005264.1 + 52706 0.77 0.255482
Target:  5'- --cGCCGCCCGCCCCCaaaaGCGCGGc--- -3'
miRNA:   3'- uauCGGCGGGUGGGGG----UGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 7577 0.72 0.466677
Target:  5'- --cGCCGCCUACCCCgCGCcgcuGCGGAg-- -3'
miRNA:   3'- uauCGGCGGGUGGGG-GUG----UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 104129 0.72 0.466677
Target:  5'- gGUGGCCGCCCGCCUaguaaacgcggCCGuCAUAGAg-- -3'
miRNA:   3'- -UAUCGGCGGGUGGG-----------GGU-GUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 157779 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 69844 0.71 0.494314
Target:  5'- -aGGCCGCCCugcuuggggcaucGCCCCUACgGCGGAc-- -3'
miRNA:   3'- uaUCGGCGGG-------------UGGGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 76623 0.7 0.605673
Target:  5'- -cGGCCGCCCACgagCACGCAGAg-- -3'
miRNA:   3'- uaUCGGCGGGUGgggGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 158163 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 128583 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.