miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 69778 0.66 0.830117
Target:  5'- --cGCgGCCC-CUCCCGCAgCAGAc-- -3'
miRNA:   3'- uauCGgCGGGuGGGGGUGU-GUCUaau -5'
24333 3' -57.7 NC_005264.1 + 38515 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 125805 0.68 0.718181
Target:  5'- --uGCCGUgU-CCCCCGCACGGAg-- -3'
miRNA:   3'- uauCGGCGgGuGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 161060 1.04 0.003328
Target:  5'- cAUAGCCGCCCACCCCCACACAGAUUAu -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUGUGUCUAAU- -5'
24333 3' -57.7 NC_005264.1 + 155849 0.66 0.812888
Target:  5'- --cGCCGCCCGCagggacaaCCCCGCGCc----- -3'
miRNA:   3'- uauCGGCGGGUG--------GGGGUGUGucuaau -5'
24333 3' -57.7 NC_005264.1 + 88348 0.66 0.812888
Target:  5'- cUGGCCGCCUuuggcGCUCUCGCAacCAGAa-- -3'
miRNA:   3'- uAUCGGCGGG-----UGGGGGUGU--GUCUaau -5'
24333 3' -57.7 NC_005264.1 + 97280 0.66 0.794992
Target:  5'- gGUAGUgGCCgCugCCUCGCGCAGc--- -3'
miRNA:   3'- -UAUCGgCGG-GugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 12904 0.66 0.785816
Target:  5'- -gAGCCGCCCGgCCUCGCAg------ -3'
miRNA:   3'- uaUCGGCGGGUgGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 12137 0.67 0.767054
Target:  5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3'
miRNA:   3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 11441 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 158352 0.67 0.747804
Target:  5'- -cGGCCGCaCCgcGCCCCUugACGGu--- -3'
miRNA:   3'- uaUCGGCG-GG--UGGGGGugUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 40195 0.67 0.767054
Target:  5'- -cAGCgCGCCCGCCCUCGCGg------ -3'
miRNA:   3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 37337 0.66 0.830117
Target:  5'- gAUGGCCGCgCACCCCgACGu------ -3'
miRNA:   3'- -UAUCGGCGgGUGGGGgUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 7160 0.67 0.747804
Target:  5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3'
miRNA:   3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 16952 0.66 0.830117
Target:  5'- -cAGCuCGCCagCAUCCCCACgagaGCAGAa-- -3'
miRNA:   3'- uaUCG-GCGG--GUGGGGGUG----UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 106076 0.67 0.776501
Target:  5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3'
miRNA:   3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 39067 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 145700 0.67 0.728143
Target:  5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3'
miRNA:   3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 31695 0.66 0.82159
Target:  5'- -gGGCUGCCCGCCaaagguCgCGCGCGGGg-- -3'
miRNA:   3'- uaUCGGCGGGUGG------GgGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 41037 0.66 0.812888
Target:  5'- -gGGCCGaCCACuCCCCAgACGGu--- -3'
miRNA:   3'- uaUCGGCgGGUG-GGGGUgUGUCuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.