miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 161060 1.04 0.003328
Target:  5'- cAUAGCCGCCCACCCCCACACAGAUUAu -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUGUGUCUAAU- -5'
24333 3' -57.7 NC_005264.1 + 131298 0.77 0.231826
Target:  5'- aAUGGCCGUCCGCCCCCACcccaACGGc--- -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUG----UGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 12271 0.77 0.231826
Target:  5'- aAUGGCCGUCCGCCCCCACcccaACGGc--- -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUG----UGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 52706 0.77 0.255482
Target:  5'- --cGCCGCCCGCCCCCaaaaGCGCGGc--- -3'
miRNA:   3'- uauCGGCGGGUGGGGG----UGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 146071 0.72 0.457333
Target:  5'- -cGGCCcgaacaGCgCGCCCCCGCGCGGGUc- -3'
miRNA:   3'- uaUCGG------CGgGUGGGGGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 7577 0.72 0.466677
Target:  5'- --cGCCGCCUACCCCgCGCcgcuGCGGAg-- -3'
miRNA:   3'- uauCGGCGGGUGGGG-GUG----UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 104129 0.72 0.466677
Target:  5'- gGUGGCCGCCCGCCUaguaaacgcggCCGuCAUAGAg-- -3'
miRNA:   3'- -UAUCGGCGGGUGGG-----------GGU-GUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 38753 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 157779 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 69844 0.71 0.494314
Target:  5'- -aGGCCGCCCugcuuggggcaucGCCCCUACgGCGGAc-- -3'
miRNA:   3'- uaUCGGCGGG-------------UGGGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 95674 0.71 0.534593
Target:  5'- -aGGCCGCcauCCACCCCUucguCACAGGg-- -3'
miRNA:   3'- uaUCGGCG---GGUGGGGGu---GUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 162387 0.7 0.554664
Target:  5'- uAUGGUCGCCaGCCCUacgaACACAGAUg- -3'
miRNA:   3'- -UAUCGGCGGgUGGGGg---UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 89746 0.7 0.599507
Target:  5'- cGUAGCCGauCCCACCCgucgaaguagagaugCCGCGCGGGc-- -3'
miRNA:   3'- -UAUCGGC--GGGUGGG---------------GGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 76623 0.7 0.605673
Target:  5'- -cGGCCGCCCACgagCACGCAGAg-- -3'
miRNA:   3'- uaUCGGCGGGUGgggGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 158163 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 39136 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 128583 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 116235 0.69 0.615963
Target:  5'- -gAGCCGUCCuCgCCCCGCAgGGAc-- -3'
miRNA:   3'- uaUCGGCGGGuG-GGGGUGUgUCUaau -5'
24333 3' -57.7 NC_005264.1 + 9556 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 23108 0.69 0.626265
Target:  5'- --uGCCGCCCGCCuCCCAacgaGCgAGAg-- -3'
miRNA:   3'- uauCGGCGGGUGG-GGGUg---UG-UCUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.