miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 162387 0.7 0.554664
Target:  5'- uAUGGUCGCCaGCCCUacgaACACAGAUg- -3'
miRNA:   3'- -UAUCGGCGGgUGGGGg---UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 161828 0.69 0.646876
Target:  5'- -cGGCCccuGCCCcCCCaCCACACGGGc-- -3'
miRNA:   3'- uaUCGG---CGGGuGGG-GGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 161060 1.04 0.003328
Target:  5'- cAUAGCCGCCCACCCCCACACAGAUUAu -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUGUGUCUAAU- -5'
24333 3' -57.7 NC_005264.1 + 160064 0.66 0.812888
Target:  5'- -gGGCCGaCCACuCCCCAgACGGu--- -3'
miRNA:   3'- uaUCGGCgGGUG-GGGGUgUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 159844 0.68 0.677682
Target:  5'- -gAGCCGCCgGCCCagucggcgcUCGCAUGGAUUc -3'
miRNA:   3'- uaUCGGCGGgUGGG---------GGUGUGUCUAAu -5'
24333 3' -57.7 NC_005264.1 + 159471 0.68 0.698044
Target:  5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3'
miRNA:   3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 159222 0.67 0.767054
Target:  5'- -cAGCgCGCCCGCCCUCGCGg------ -3'
miRNA:   3'- uaUCG-GCGGGUGGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 158983 0.68 0.687886
Target:  5'- -gGGCaGCCCAauCCCCgGCGCAGGa-- -3'
miRNA:   3'- uaUCGgCGGGU--GGGGgUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 158352 0.67 0.747804
Target:  5'- -cGGCCGCaCCgcGCCCCUugACGGu--- -3'
miRNA:   3'- uaUCGGCG-GG--UGGGGGugUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 158163 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 158094 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 157779 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 157542 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 156364 0.66 0.830117
Target:  5'- gAUGGCCGCgCACCCCgACGu------ -3'
miRNA:   3'- -UAUCGGCGgGUGGGGgUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 155849 0.66 0.812888
Target:  5'- --cGCCGCCCGCagggacaaCCCCGCGCc----- -3'
miRNA:   3'- uauCGGCGGGUG--------GGGGUGUGucuaau -5'
24333 3' -57.7 NC_005264.1 + 150721 0.66 0.82159
Target:  5'- -gGGCUGCCCGCCaaagguCgCGCGCGGGg-- -3'
miRNA:   3'- uaUCGGCGGGUGG------GgGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146684 0.68 0.698044
Target:  5'- uUAGCCGCCCcuugcaACCCCuCGCGCu----- -3'
miRNA:   3'- uAUCGGCGGG------UGGGG-GUGUGucuaau -5'
24333 3' -57.7 NC_005264.1 + 146664 0.68 0.698044
Target:  5'- --uGCCGCgaCCgACCUCCGCGCAGGg-- -3'
miRNA:   3'- uauCGGCG--GG-UGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146278 0.68 0.69703
Target:  5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3'
miRNA:   3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 146071 0.72 0.457333
Target:  5'- -cGGCCcgaacaGCgCGCCCCCGCGCGGGUc- -3'
miRNA:   3'- uaUCGG------CGgGUGGGGGUGUGUCUAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.