miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 97280 0.66 0.794992
Target:  5'- gGUAGUgGCCgCugCCUCGCGCAGc--- -3'
miRNA:   3'- -UAUCGgCGG-GugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 104129 0.72 0.466677
Target:  5'- gGUGGCCGCCCGCCUaguaaacgcggCCGuCAUAGAg-- -3'
miRNA:   3'- -UAUCGGCGGGUGGG-----------GGU-GUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 106076 0.67 0.776501
Target:  5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3'
miRNA:   3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 108632 0.69 0.636572
Target:  5'- --cGCCGUCCGuauCCCCCGCGCAa---- -3'
miRNA:   3'- uauCGGCGGGU---GGGGGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 109514 0.68 0.715178
Target:  5'- -gGGCUGCCCcugcuggccaagcaGCCCCUGgGCAGAc-- -3'
miRNA:   3'- uaUCGGCGGG--------------UGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 116235 0.69 0.615963
Target:  5'- -gAGCCGUCCuCgCCCCGCAgGGAc-- -3'
miRNA:   3'- uaUCGGCGGGuG-GGGGUGUgUCUaau -5'
24333 3' -57.7 NC_005264.1 + 125805 0.68 0.718181
Target:  5'- --uGCCGUgU-CCCCCGCACGGAg-- -3'
miRNA:   3'- uauCGGCGgGuGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 126187 0.67 0.747804
Target:  5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3'
miRNA:   3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 128583 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 130468 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 131164 0.67 0.767054
Target:  5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3'
miRNA:   3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 131298 0.77 0.231826
Target:  5'- aAUGGCCGUCCGCCCCCACcccaACGGc--- -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUG----UGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 131930 0.66 0.785816
Target:  5'- -gAGCCGCCCGgCCUCGCAg------ -3'
miRNA:   3'- uaUCGGCGGGUgGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 137472 0.67 0.757485
Target:  5'- cUAGCCGCCCuCCUcgaCCACACGc---- -3'
miRNA:   3'- uAUCGGCGGGuGGG---GGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 145700 0.67 0.728143
Target:  5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3'
miRNA:   3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146071 0.72 0.457333
Target:  5'- -cGGCCcgaacaGCgCGCCCCCGCGCGGGUc- -3'
miRNA:   3'- uaUCGG------CGgGUGGGGGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 146278 0.68 0.69703
Target:  5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3'
miRNA:   3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 146664 0.68 0.698044
Target:  5'- --uGCCGCgaCCgACCUCCGCGCAGGg-- -3'
miRNA:   3'- uauCGGCG--GG-UGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146684 0.68 0.698044
Target:  5'- uUAGCCGCCCcuugcaACCCCuCGCGCu----- -3'
miRNA:   3'- uAUCGGCGGG------UGGGG-GUGUGucuaau -5'
24333 3' -57.7 NC_005264.1 + 150721 0.66 0.82159
Target:  5'- -gGGCUGCCCGCCaaagguCgCGCGCGGGg-- -3'
miRNA:   3'- uaUCGGCGGGUGG------GgGUGUGUCUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.