miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 125805 0.68 0.718181
Target:  5'- --uGCCGUgU-CCCCCGCACGGAg-- -3'
miRNA:   3'- uauCGGCGgGuGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 109514 0.68 0.715178
Target:  5'- -gGGCUGCCCcugcuggccaagcaGCCCCUGgGCAGAc-- -3'
miRNA:   3'- uaUCGGCGGG--------------UGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146664 0.68 0.698044
Target:  5'- --uGCCGCgaCCgACCUCCGCGCAGGg-- -3'
miRNA:   3'- uauCGGCG--GG-UGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 33305 0.68 0.698044
Target:  5'- --cGCCuaaGCCCACgCCCGCAguGGUUc -3'
miRNA:   3'- uauCGG---CGGGUGgGGGUGUguCUAAu -5'
24333 3' -57.7 NC_005264.1 + 146684 0.68 0.698044
Target:  5'- uUAGCCGCCCcuugcaACCCCuCGCGCu----- -3'
miRNA:   3'- uAUCGGCGGG------UGGGG-GUGUGucuaau -5'
24333 3' -57.7 NC_005264.1 + 40444 0.68 0.698044
Target:  5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3'
miRNA:   3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 75544 0.68 0.698044
Target:  5'- -gGGCCGCguaCGCUCCCguaACGCGGAUg- -3'
miRNA:   3'- uaUCGGCGg--GUGGGGG---UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 159471 0.68 0.698044
Target:  5'- -aAGCCcuCgCCGCCCCCAgACGGAg-- -3'
miRNA:   3'- uaUCGGc-G-GGUGGGGGUgUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 146278 0.68 0.69703
Target:  5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3'
miRNA:   3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 158983 0.68 0.687886
Target:  5'- -gGGCaGCCCAauCCCCgGCGCAGGa-- -3'
miRNA:   3'- uaUCGgCGGGU--GGGGgUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 94591 0.68 0.681768
Target:  5'- gAUGGCaucgaggaagacaaGCCCGCCgCCgGCGCGGAUa- -3'
miRNA:   3'- -UAUCGg-------------CGGGUGG-GGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 159844 0.68 0.677682
Target:  5'- -gAGCCGCCgGCCCagucggcgcUCGCAUGGAUUc -3'
miRNA:   3'- uaUCGGCGGgUGGG---------GGUGUGUCUAAu -5'
24333 3' -57.7 NC_005264.1 + 161828 0.69 0.646876
Target:  5'- -cGGCCccuGCCCcCCCaCCACACGGGc-- -3'
miRNA:   3'- uaUCGG---CGGGuGGG-GGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 56154 0.69 0.646876
Target:  5'- uUGGCCGCUuuuuCGCaCUCCGCGCGGAg-- -3'
miRNA:   3'- uAUCGGCGG----GUG-GGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 108632 0.69 0.636572
Target:  5'- --cGCCGUCCGuauCCCCCGCGCAa---- -3'
miRNA:   3'- uauCGGCGGGU---GGGGGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 23108 0.69 0.626265
Target:  5'- --uGCCGCCCGCCuCCCAacgaGCgAGAg-- -3'
miRNA:   3'- uauCGGCGGGUGG-GGGUg---UG-UCUaau -5'
24333 3' -57.7 NC_005264.1 + 9556 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 116235 0.69 0.615963
Target:  5'- -gAGCCGUCCuCgCCCCGCAgGGAc-- -3'
miRNA:   3'- uaUCGGCGGGuG-GGGGUGUgUCUaau -5'
24333 3' -57.7 NC_005264.1 + 128583 0.69 0.615963
Target:  5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3'
miRNA:   3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 76623 0.7 0.605673
Target:  5'- -cGGCCGCCCACgagCACGCAGAg-- -3'
miRNA:   3'- uaUCGGCGGGUGgggGUGUGUCUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.