miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 12137 0.67 0.767054
Target:  5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3'
miRNA:   3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 7102 0.67 0.766102
Target:  5'- -aGGCgGCCCAccauaacCCCCCGCGCGu---- -3'
miRNA:   3'- uaUCGgCGGGU-------GGGGGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 72132 0.67 0.757485
Target:  5'- --cGCCGCCUGCCggauaCCACACGGu--- -3'
miRNA:   3'- uauCGGCGGGUGGg----GGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 137472 0.67 0.757485
Target:  5'- cUAGCCGCCCuCCUcgaCCACACGc---- -3'
miRNA:   3'- uAUCGGCGGGuGGG---GGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 86342 0.67 0.757485
Target:  5'- -cGGUCGCCUAuucCCCCCgACAgAGAUg- -3'
miRNA:   3'- uaUCGGCGGGU---GGGGG-UGUgUCUAau -5'
24333 3' -57.7 NC_005264.1 + 59082 0.67 0.747804
Target:  5'- -cGGCCGCCCGCCUCaGCAU-GAa-- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 158094 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 158352 0.67 0.747804
Target:  5'- -cGGCCGCaCCgcGCCCCUugACGGu--- -3'
miRNA:   3'- uaUCGGCG-GG--UGGGGGugUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 7160 0.67 0.747804
Target:  5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3'
miRNA:   3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 126187 0.67 0.747804
Target:  5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3'
miRNA:   3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 39067 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 82967 0.67 0.73802
Target:  5'- --cGCCGCCgCGCCCCCgugacgaagguACGguGAUa- -3'
miRNA:   3'- uauCGGCGG-GUGGGGG-----------UGUguCUAau -5'
24333 3' -57.7 NC_005264.1 + 130468 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 11441 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 38515 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 54375 0.67 0.73802
Target:  5'- --cGCgGCCaccggAUCCCCGCGCGGAUa- -3'
miRNA:   3'- uauCGgCGGg----UGGGGGUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 157542 0.67 0.73802
Target:  5'- -cAGUCGCCCGCCCC---ACGGGUc- -3'
miRNA:   3'- uaUCGGCGGGUGGGGgugUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 145700 0.67 0.728143
Target:  5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3'
miRNA:   3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 71104 0.67 0.728143
Target:  5'- -cAGCCGCCCucgGCCCUgGugaGCAGAUa- -3'
miRNA:   3'- uaUCGGCGGG---UGGGGgUg--UGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 51429 0.68 0.718181
Target:  5'- -gAGCCGCCguCGCCCCCuccguccuCAgAGAUg- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGu-------GUgUCUAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.