miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 142967 0.66 0.739732
Target:  5'- --aGCGCGGcCGCgGCGGUCUCucgggcaugaggcggGCGUGGg -3'
miRNA:   3'- gaaCGUGCC-GCG-CGCUAGGG---------------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 12964 0.66 0.735974
Target:  5'- --cGgGCGGCGCGCGccgCCgacgaCGaCGCGAg -3'
miRNA:   3'- gaaCgUGCCGCGCGCua-GG-----GC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39542 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 158569 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 64732 0.66 0.735974
Target:  5'- --gGCuCGGCGC-CGugcCCCGCGCa- -3'
miRNA:   3'- gaaCGuGCCGCGcGCua-GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 17365 0.66 0.735974
Target:  5'- --aGCugGCGGCgGCGCGGUCUguguaCGUGCGc -3'
miRNA:   3'- gaaCG--UGCCG-CGCGCUAGG-----GCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 123480 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 98329 0.66 0.726521
Target:  5'- --gGCGCGGacagaacaGCGCGGUCCaG-GCGAc -3'
miRNA:   3'- gaaCGUGCCg-------CGCGCUAGGgCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 4453 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 42063 0.66 0.726521
Target:  5'- gUUGCccGCGGCGCGUGGcgUCagCUGCGCc- -3'
miRNA:   3'- gAACG--UGCCGCGCGCU--AG--GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 45042 0.66 0.716992
Target:  5'- -aUGgACGGCGaCGagGAUgCCGCGCa- -3'
miRNA:   3'- gaACgUGCCGC-GCg-CUAgGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 158280 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 20336 0.66 0.716992
Target:  5'- uCUUGCACGuuGC-CG-UUCCGCGCGc -3'
miRNA:   3'- -GAACGUGCcgCGcGCuAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 30619 0.66 0.716992
Target:  5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3'
miRNA:   3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 149646 0.66 0.716992
Target:  5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3'
miRNA:   3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 136283 0.66 0.716992
Target:  5'- gUUGCGCGGC-CGuCGuuaccGUCCCaGCGCa- -3'
miRNA:   3'- gAACGUGCCGcGC-GC-----UAGGG-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 34254 0.66 0.716992
Target:  5'- --cGCcuCGuGCGCGCGGUaaUCCGCGUGc -3'
miRNA:   3'- gaaCGu-GC-CGCGCGCUA--GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 39253 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 101339 0.67 0.707397
Target:  5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3'
miRNA:   3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5'
24335 3' -60.5 NC_005264.1 + 106082 0.67 0.707397
Target:  5'- cCUUGCuuGGCGUGCGugccaAUCUCGgccucCGCGGa -3'
miRNA:   3'- -GAACGugCCGCGCGC-----UAGGGC-----GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.