miRNA display CGI


Results 21 - 40 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 24415 0.69 0.560669
Target:  5'- --cGCGCGGCGCGUuaaacacgCCCGCcCGGa -3'
miRNA:   3'- gaaCGUGCCGCGCGcua-----GGGCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 26376 0.69 0.5801
Target:  5'- -cUGCGCGGCGC-CG-UCUCugaGCGCGGc -3'
miRNA:   3'- gaACGUGCCGCGcGCuAGGG---CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 26650 0.69 0.560669
Target:  5'- --aGCGCGGCGC-CGG-CgCCGCGCu- -3'
miRNA:   3'- gaaCGUGCCGCGcGCUaG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 28705 0.69 0.5801
Target:  5'- -cUGUugGGCGUGgucuCGAagaUCCGCGCGAa -3'
miRNA:   3'- gaACGugCCGCGC----GCUa--GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 30396 0.67 0.697742
Target:  5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3'
miRNA:   3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 30619 0.66 0.716992
Target:  5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3'
miRNA:   3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 33258 0.67 0.668505
Target:  5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3'
miRNA:   3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 34254 0.66 0.716992
Target:  5'- --cGCcuCGuGCGCGCGGUaaUCCGCGUGc -3'
miRNA:   3'- gaaCGu-GC-CGCGCGCUA--GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 37671 0.67 0.658694
Target:  5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3'
miRNA:   3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5'
24335 3' -60.5 NC_005264.1 + 39178 0.77 0.208421
Target:  5'- --gGCugGGCGCGCGAcucuaCCGCGCa- -3'
miRNA:   3'- gaaCGugCCGCGCGCUag---GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 39253 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39542 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39618 0.72 0.398303
Target:  5'- gCUUGCuccuagacACGGCGCuGUGGUUuugCCGCGCGGc -3'
miRNA:   3'- -GAACG--------UGCCGCG-CGCUAG---GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 40390 0.67 0.662621
Target:  5'- --aGCGCGG-GCGCGGcccuacgucccuccCCCGCGCa- -3'
miRNA:   3'- gaaCGUGCCgCGCGCUa-------------GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 42063 0.66 0.726521
Target:  5'- gUUGCccGCGGCGCGUGGcgUCagCUGCGCc- -3'
miRNA:   3'- gAACG--UGCCGCGCGCU--AG--GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 44260 0.68 0.609491
Target:  5'- -gUGCuguuCGGCGCGUcacgCCGCGCGGa -3'
miRNA:   3'- gaACGu---GCCGCGCGcuagGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 45042 0.66 0.716992
Target:  5'- -aUGgACGGCGaCGagGAUgCCGCGCa- -3'
miRNA:   3'- gaACgUGCCGC-GCg-CUAgGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 45682 0.74 0.322056
Target:  5'- --aGCACGuG-GCGCGAUCCCGgGgGAa -3'
miRNA:   3'- gaaCGUGC-CgCGCGCUAGGGCgCgCU- -5'
24335 3' -60.5 NC_005264.1 + 47094 0.68 0.648864
Target:  5'- --gGCACGGCGagaguauaGCGcUCgCCGCGCc- -3'
miRNA:   3'- gaaCGUGCCGCg-------CGCuAG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 48638 0.66 0.763798
Target:  5'- cCUUGCGCGG-GUGCcAUCCagaucCGCGAc -3'
miRNA:   3'- -GAACGUGCCgCGCGcUAGGgc---GCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.