miRNA display CGI


Results 21 - 40 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 132443 0.7 0.494371
Target:  5'- --cGCAcCGGCGCGCGAcCgCCGCcgccgagacGCGAc -3'
miRNA:   3'- gaaCGU-GCCGCGCGCUaG-GGCG---------CGCU- -5'
24335 3' -60.5 NC_005264.1 + 132216 0.66 0.745343
Target:  5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3'
miRNA:   3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5'
24335 3' -60.5 NC_005264.1 + 131715 0.68 0.648864
Target:  5'- -cUGCGCGGCGUugcugGCGcUCUgGCGCu- -3'
miRNA:   3'- gaACGUGCCGCG-----CGCuAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 131597 0.71 0.431019
Target:  5'- -gUGUggagggaGCGGCGCGCGugggCgCGCGCGGa -3'
miRNA:   3'- gaACG-------UGCCGCGCGCua--GgGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 129917 0.71 0.458115
Target:  5'- ---aCGCGGCGCccccGCGAccCCUGCGCGAu -3'
miRNA:   3'- gaacGUGCCGCG----CGCUa-GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 129852 0.66 0.745343
Target:  5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3'
miRNA:   3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 129032 0.66 0.745343
Target:  5'- cCUUGC-CGGCGaGcCGGUCCaaagcggcgUGCGCGGc -3'
miRNA:   3'- -GAACGuGCCGCgC-GCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 128879 0.69 0.570364
Target:  5'- --gGUcaaGCGGCcccuaucggGCGCGGUCCCGgCGCGc -3'
miRNA:   3'- gaaCG---UGCCG---------CGCGCUAGGGC-GCGCu -5'
24335 3' -60.5 NC_005264.1 + 127835 0.67 0.697742
Target:  5'- gUUGCcuccGCGGCGgccgGCGGUCUagaacccggCGCGCGAa -3'
miRNA:   3'- gAACG----UGCCGCg---CGCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 126890 0.67 0.697742
Target:  5'- --cGCcaucguCGGCGCGaaacaGGUCUCGCGCu- -3'
miRNA:   3'- gaaCGu-----GCCGCGCg----CUAGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 126300 0.66 0.754621
Target:  5'- --cGCuuuCgGGCGCGCGGccgauggcUCCUGCGCc- -3'
miRNA:   3'- gaaCGu--G-CCGCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 123480 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 122828 0.67 0.668505
Target:  5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3'
miRNA:   3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 120198 0.68 0.619327
Target:  5'- -cUGC-CGGCGCGCGAUggggguaCGCaGCGGa -3'
miRNA:   3'- gaACGuGCCGCGCGCUAgg-----GCG-CGCU- -5'
24335 3' -60.5 NC_005264.1 + 119420 0.72 0.390175
Target:  5'- aCUUGCACucgcggcuGGCGgGCGAUCUCGCuGCc- -3'
miRNA:   3'- -GAACGUG--------CCGCgCGCUAGGGCG-CGcu -5'
24335 3' -60.5 NC_005264.1 + 118288 0.67 0.678289
Target:  5'- --aGCACGGCGUuugacgucucgGUGAUguaCUCGCGCGc -3'
miRNA:   3'- gaaCGUGCCGCG-----------CGCUA---GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 117289 0.71 0.476072
Target:  5'- --cGUACGcGUGCGCGAugccgcucUCCgCGUGCGAc -3'
miRNA:   3'- gaaCGUGC-CGCGCGCU--------AGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 117014 0.74 0.327022
Target:  5'- -cUGCGCGGCgcaugacgaguacaGCGCGAUCa-GCGCGGc -3'
miRNA:   3'- gaACGUGCCG--------------CGCGCUAGggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 115276 0.66 0.754621
Target:  5'- -cUGCAguauUGuaGCGCGAcaacgacgUCCCGCGCa- -3'
miRNA:   3'- gaACGU----GCcgCGCGCU--------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 114742 0.71 0.431878
Target:  5'- --cGCGC-GCGUGCaGAaCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGcCGCGCG-CUaGGGCGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.