Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24335 | 3' | -60.5 | NC_005264.1 | + | 159532 | 1.08 | 0.001443 |
Target: 5'- gCUUGCACGGCGCGCGAUCCCGCGCGAg -3' miRNA: 3'- -GAACGUGCCGCGCGCUAGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 159417 | 0.67 | 0.662621 |
Target: 5'- --aGCGCGG-GCGCGGcccuacgucccuccCCCGCGCa- -3' miRNA: 3'- gaaCGUGCCgCGCGCUa-------------GGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 158569 | 0.66 | 0.735974 |
Target: 5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3' miRNA: 3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 158280 | 0.66 | 0.716992 |
Target: 5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3' miRNA: 3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 156697 | 0.67 | 0.658694 |
Target: 5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3' miRNA: 3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 152285 | 0.67 | 0.668505 |
Target: 5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3' miRNA: 3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 149646 | 0.66 | 0.716992 |
Target: 5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3' miRNA: 3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 149423 | 0.67 | 0.697742 |
Target: 5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3' miRNA: 3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 148879 | 0.67 | 0.697742 |
Target: 5'- --cGCAucuuUGGCGCGCGcuuaucUCUCGCGCu- -3' miRNA: 3'- gaaCGU----GCCGCGCGCu-----AGGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 146064 | 0.7 | 0.493448 |
Target: 5'- -cUGCGucCGGCccgaacaGCGCGccCCCGCGCGGg -3' miRNA: 3'- gaACGU--GCCG-------CGCGCuaGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 143774 | 0.72 | 0.382155 |
Target: 5'- -aUGCGCGGgaaGCGCGcuUCCCGCGgGu -3' miRNA: 3'- gaACGUGCCg--CGCGCu-AGGGCGCgCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142967 | 0.66 | 0.739732 |
Target: 5'- --aGCGCGGcCGCgGCGGUCUCucgggcaugaggcggGCGUGGg -3' miRNA: 3'- gaaCGUGCC-GCG-CGCUAGGG---------------CGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142503 | 0.67 | 0.688037 |
Target: 5'- --gGCACGGCGCGUu-UCCUGCuugcCGGu -3' miRNA: 3'- gaaCGUGCCGCGCGcuAGGGCGc---GCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142280 | 0.66 | 0.754621 |
Target: 5'- --cGCGCuGGCagaGCGCGAuacauaUCUCGCGCu- -3' miRNA: 3'- gaaCGUG-CCG---CGCGCU------AGGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142041 | 0.68 | 0.59967 |
Target: 5'- -gUGCAUGGCGUGCacgguUCCCccgGCGCa- -3' miRNA: 3'- gaACGUGCCGCGCGcu---AGGG---CGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 136362 | 0.66 | 0.754621 |
Target: 5'- --cGCugGGCGCug---CCgGCGCGAa -3' miRNA: 3'- gaaCGugCCGCGcgcuaGGgCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 136283 | 0.66 | 0.716992 |
Target: 5'- gUUGCGCGGC-CGuCGuuaccGUCCCaGCGCa- -3' miRNA: 3'- gAACGUGCCGcGC-GC-----UAGGG-CGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 136193 | 0.69 | 0.560669 |
Target: 5'- --aGCGCGGCGC-CGG-CgCCGCGCu- -3' miRNA: 3'- gaaCGUGCCGCGcGCUaG-GGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 133967 | 0.67 | 0.697742 |
Target: 5'- uCUU-CGCGGUG-GCGuUCgCCGCGCGGu -3' miRNA: 3'- -GAAcGUGCCGCgCGCuAG-GGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 133538 | 0.67 | 0.662621 |
Target: 5'- -aUGCAUGGCGCaaagaaaacgucgagGCacGcgCCCGCGCa- -3' miRNA: 3'- gaACGUGCCGCG---------------CG--CuaGGGCGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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