miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 159532 1.08 0.001443
Target:  5'- gCUUGCACGGCGCGCGAUCCCGCGCGAg -3'
miRNA:   3'- -GAACGUGCCGCGCGCUAGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 159417 0.67 0.662621
Target:  5'- --aGCGCGG-GCGCGGcccuacgucccuccCCCGCGCa- -3'
miRNA:   3'- gaaCGUGCCgCGCGCUa-------------GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 158569 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 158280 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 156697 0.67 0.658694
Target:  5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3'
miRNA:   3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5'
24335 3' -60.5 NC_005264.1 + 152285 0.67 0.668505
Target:  5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3'
miRNA:   3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 149646 0.66 0.716992
Target:  5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3'
miRNA:   3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 149423 0.67 0.697742
Target:  5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3'
miRNA:   3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 148879 0.67 0.697742
Target:  5'- --cGCAucuuUGGCGCGCGcuuaucUCUCGCGCu- -3'
miRNA:   3'- gaaCGU----GCCGCGCGCu-----AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 146064 0.7 0.493448
Target:  5'- -cUGCGucCGGCccgaacaGCGCGccCCCGCGCGGg -3'
miRNA:   3'- gaACGU--GCCG-------CGCGCuaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 143774 0.72 0.382155
Target:  5'- -aUGCGCGGgaaGCGCGcuUCCCGCGgGu -3'
miRNA:   3'- gaACGUGCCg--CGCGCu-AGGGCGCgCu -5'
24335 3' -60.5 NC_005264.1 + 142967 0.66 0.739732
Target:  5'- --aGCGCGGcCGCgGCGGUCUCucgggcaugaggcggGCGUGGg -3'
miRNA:   3'- gaaCGUGCC-GCG-CGCUAGGG---------------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 142503 0.67 0.688037
Target:  5'- --gGCACGGCGCGUu-UCCUGCuugcCGGu -3'
miRNA:   3'- gaaCGUGCCGCGCGcuAGGGCGc---GCU- -5'
24335 3' -60.5 NC_005264.1 + 142280 0.66 0.754621
Target:  5'- --cGCGCuGGCagaGCGCGAuacauaUCUCGCGCu- -3'
miRNA:   3'- gaaCGUG-CCG---CGCGCU------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 142041 0.68 0.59967
Target:  5'- -gUGCAUGGCGUGCacgguUCCCccgGCGCa- -3'
miRNA:   3'- gaACGUGCCGCGCGcu---AGGG---CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 136362 0.66 0.754621
Target:  5'- --cGCugGGCGCug---CCgGCGCGAa -3'
miRNA:   3'- gaaCGugCCGCGcgcuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 136283 0.66 0.716992
Target:  5'- gUUGCGCGGC-CGuCGuuaccGUCCCaGCGCa- -3'
miRNA:   3'- gAACGUGCCGcGC-GC-----UAGGG-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 136193 0.69 0.560669
Target:  5'- --aGCGCGGCGC-CGG-CgCCGCGCu- -3'
miRNA:   3'- gaaCGUGCCGCGcGCUaG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 133967 0.67 0.697742
Target:  5'- uCUU-CGCGGUG-GCGuUCgCCGCGCGGu -3'
miRNA:   3'- -GAAcGUGCCGCgCGCuAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 133538 0.67 0.662621
Target:  5'- -aUGCAUGGCGCaaagaaaacgucgagGCacGcgCCCGCGCa- -3'
miRNA:   3'- gaACGUGCCGCG---------------CG--CuaGGGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.