miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 28705 0.69 0.5801
Target:  5'- -cUGUugGGCGUGgucuCGAagaUCCGCGCGAa -3'
miRNA:   3'- gaACGugCCGCGC----GCUa--GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 26650 0.69 0.560669
Target:  5'- --aGCGCGGCGC-CGG-CgCCGCGCu- -3'
miRNA:   3'- gaaCGUGCCGCGcGCUaG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 24415 0.69 0.560669
Target:  5'- --cGCGCGGCGCGUuaaacacgCCCGCcCGGa -3'
miRNA:   3'- gaaCGUGCCGCGCGcua-----GGGCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 82049 0.69 0.560669
Target:  5'- -aUGCGCaGGCGCGCc-UCCUcuagaGCGCGGa -3'
miRNA:   3'- gaACGUG-CCGCGCGcuAGGG-----CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 84324 0.69 0.570364
Target:  5'- --gGCACGGCGCGaUGGUUacuggccucaCCGCGUGc -3'
miRNA:   3'- gaaCGUGCCGCGC-GCUAG----------GGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 18054 0.69 0.570364
Target:  5'- --aGCgGCGGCGcCGCGAgCCagggCGCGCGGg -3'
miRNA:   3'- gaaCG-UGCCGC-GCGCUaGG----GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 109984 0.69 0.570364
Target:  5'- -gUGCACGucguauGCGCGCaGcUCCCGCGUa- -3'
miRNA:   3'- gaACGUGC------CGCGCG-CuAGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 128879 0.69 0.570364
Target:  5'- --gGUcaaGCGGCcccuaucggGCGCGGUCCCGgCGCGc -3'
miRNA:   3'- gaaCG---UGCCG---------CGCGCUAGGGC-GCGCu -5'
24335 3' -60.5 NC_005264.1 + 65607 0.69 0.5801
Target:  5'- uCUUGCugcugcguucGCGGCuCGUGGguaCCCGCGCGc -3'
miRNA:   3'- -GAACG----------UGCCGcGCGCUa--GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 94415 0.69 0.551019
Target:  5'- --gGCGCGGacuGCGCGAUCgCUGaCGUGGg -3'
miRNA:   3'- gaaCGUGCCg--CGCGCUAG-GGC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 132443 0.7 0.494371
Target:  5'- --cGCAcCGGCGCGCGAcCgCCGCcgccgagacGCGAc -3'
miRNA:   3'- gaaCGU-GCCGCGCGCUaG-GGCG---------CGCU- -5'
24335 3' -60.5 NC_005264.1 + 117289 0.71 0.476072
Target:  5'- --cGUACGcGUGCGCGAugccgcucUCCgCGUGCGAc -3'
miRNA:   3'- gaaCGUGC-CGCGCGCU--------AGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 74719 0.76 0.239452
Target:  5'- --gGCGCGGCGCGCGAaacugucUCCUGCuaGGu -3'
miRNA:   3'- gaaCGUGCCGCGCGCU-------AGGGCGcgCU- -5'
24335 3' -60.5 NC_005264.1 + 22846 0.75 0.275497
Target:  5'- --gGUACGGaCGgGCGAggCCGCGCGAa -3'
miRNA:   3'- gaaCGUGCC-GCgCGCUagGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 117014 0.74 0.327022
Target:  5'- -cUGCGCGGCgcaugacgaguacaGCGCGAUCa-GCGCGGc -3'
miRNA:   3'- gaACGUGCCG--------------CGCGCUAGggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39618 0.72 0.398303
Target:  5'- gCUUGCuccuagacACGGCGCuGUGGUUuugCCGCGCGGc -3'
miRNA:   3'- -GAACG--------UGCCGCG-CGCUAG---GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 54416 0.72 0.423329
Target:  5'- gUUGCGCGGCGCGCcGA-CUaggGCGUGGg -3'
miRNA:   3'- gAACGUGCCGCGCG-CUaGGg--CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 64145 0.71 0.431878
Target:  5'- --cGcCACGGCGcCGCGAUCCgGC-CGGu -3'
miRNA:   3'- gaaC-GUGCCGC-GCGCUAGGgCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 114742 0.71 0.431878
Target:  5'- --cGCGC-GCGUGCaGAaCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGcCGCGCG-CUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 54373 0.71 0.476072
Target:  5'- --cGCGCGGCcacCG-GAUcCCCGCGCGGa -3'
miRNA:   3'- gaaCGUGCCGc--GCgCUA-GGGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.