miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 1171 0.68 0.619327
Target:  5'- -cUGC-CGGCGCGCGAUggggguaCGCaGCGGa -3'
miRNA:   3'- gaACGuGCCGCGCGCUAgg-----GCG-CGCU- -5'
24335 3' -60.5 NC_005264.1 + 3802 0.67 0.668505
Target:  5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3'
miRNA:   3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 4453 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 4498 0.66 0.754621
Target:  5'- --gGCGCGGUGCGgcCGcuuguGUUCCGCGUGc -3'
miRNA:   3'- gaaCGUGCCGCGC--GC-----UAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 6310 0.66 0.745343
Target:  5'- aCUUGCGCGGCGa--GGcUUCGCGUGGc -3'
miRNA:   3'- -GAACGUGCCGCgcgCUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 9853 0.69 0.570364
Target:  5'- --gGUcaaGCGGCcccuaucggGCGCGGUCCCGgCGCGc -3'
miRNA:   3'- gaaCG---UGCCG---------CGCGCUAGGGC-GCGCu -5'
24335 3' -60.5 NC_005264.1 + 10557 0.66 0.761971
Target:  5'- aCUUGCGCaGGCGCGCaacauaagcaaaAUCCUGgccaagucCGCGAc -3'
miRNA:   3'- -GAACGUG-CCGCGCGc-----------UAGGGC--------GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 10826 0.66 0.745343
Target:  5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3'
miRNA:   3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 12964 0.66 0.735974
Target:  5'- --cGgGCGGCGCGCGccgCCgacgaCGaCGCGAg -3'
miRNA:   3'- gaaCgUGCCGCGCGCua-GG-----GC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 13189 0.66 0.745343
Target:  5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3'
miRNA:   3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5'
24335 3' -60.5 NC_005264.1 + 13416 0.7 0.494371
Target:  5'- --cGCAcCGGCGCGCGAcCgCCGCcgccgagacGCGAc -3'
miRNA:   3'- gaaCGU-GCCGCGCGCUaG-GGCG---------CGCU- -5'
24335 3' -60.5 NC_005264.1 + 14548 0.68 0.648864
Target:  5'- --cGCAC-GCGCGCGGucuccagaaucUCCCGC-CGGg -3'
miRNA:   3'- gaaCGUGcCGCGCGCU-----------AGGGCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 16560 0.68 0.59967
Target:  5'- --aGCGCGGUGgGCGGcgCCgGgGCGGc -3'
miRNA:   3'- gaaCGUGCCGCgCGCUa-GGgCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 17365 0.66 0.735974
Target:  5'- --aGCugGCGGCgGCGCGGUCUguguaCGUGCGc -3'
miRNA:   3'- gaaCG--UGCCG-CGCGCUAGG-----GCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 18054 0.69 0.570364
Target:  5'- --aGCgGCGGCGcCGCGAgCCagggCGCGCGGg -3'
miRNA:   3'- gaaCG-UGCCGC-GCGCUaGG----GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 19064 0.67 0.688037
Target:  5'- ---cCGCGGgaaGCGCGcuUCCCGCGCa- -3'
miRNA:   3'- gaacGUGCCg--CGCGCu-AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 20026 0.67 0.658694
Target:  5'- ---cCACGGCGCGCucgcaCCCGUGCa- -3'
miRNA:   3'- gaacGUGCCGCGCGcua--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 20336 0.66 0.716992
Target:  5'- uCUUGCACGuuGC-CG-UUCCGCGCGc -3'
miRNA:   3'- -GAACGUGCcgCGcGCuAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 22007 0.67 0.668505
Target:  5'- --gGCGCGGCGCGUaGGUuuuuugCCCGCgaGCGu -3'
miRNA:   3'- gaaCGUGCCGCGCG-CUA------GGGCG--CGCu -5'
24335 3' -60.5 NC_005264.1 + 22846 0.75 0.275497
Target:  5'- --gGUACGGaCGgGCGAggCCGCGCGAa -3'
miRNA:   3'- gaaCGUGCC-GCgCGCUagGGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.