miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 64732 0.66 0.735974
Target:  5'- --gGCuCGGCGC-CGugcCCCGCGCa- -3'
miRNA:   3'- gaaCGuGCCGCGcGCua-GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 49342 0.66 0.763798
Target:  5'- -gUGUACGaGgGuCGCGGUuggcaCUCGCGCGAc -3'
miRNA:   3'- gaACGUGC-CgC-GCGCUA-----GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 53257 0.66 0.763798
Target:  5'- --cGCG-GGCGCGUGucuggcuugcuGUCCCGCGgCGc -3'
miRNA:   3'- gaaCGUgCCGCGCGC-----------UAGGGCGC-GCu -5'
24335 3' -60.5 NC_005264.1 + 129852 0.66 0.745343
Target:  5'- --aGCGCccgauGGCgauauGCGCGAgCCCGCGUGu -3'
miRNA:   3'- gaaCGUG-----CCG-----CGCGCUaGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 6310 0.66 0.745343
Target:  5'- aCUUGCGCGGCGa--GGcUUCGCGUGGc -3'
miRNA:   3'- -GAACGUGCCGCgcgCUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 158569 0.66 0.735974
Target:  5'- -cUGC-CGcCGCcccGCGGuUCCCGCGCGGc -3'
miRNA:   3'- gaACGuGCcGCG---CGCU-AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 94067 0.66 0.753698
Target:  5'- --cGCuuUGGCGC-CGGcaacaugUCCCGCGUGAc -3'
miRNA:   3'- gaaCGu-GCCGCGcGCU-------AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 142280 0.66 0.754621
Target:  5'- --cGCGCuGGCagaGCGCGAuacauaUCUCGCGCu- -3'
miRNA:   3'- gaaCGUG-CCG---CGCGCU------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 17365 0.66 0.735974
Target:  5'- --aGCugGCGGCgGCGCGGUCUguguaCGUGCGc -3'
miRNA:   3'- gaaCG--UGCCG-CGCGCUAGG-----GCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 132216 0.66 0.745343
Target:  5'- --cGCGCuGCGCGCGGaUCCGuCGCc- -3'
miRNA:   3'- gaaCGUGcCGCGCGCUaGGGC-GCGcu -5'
24335 3' -60.5 NC_005264.1 + 34254 0.66 0.716992
Target:  5'- --cGCcuCGuGCGCGCGGUaaUCCGCGUGc -3'
miRNA:   3'- gaaCGu-GC-CGCGCGCUA--GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 149646 0.66 0.716992
Target:  5'- --gGCgGCGGCGaCG-GAUCCgCGCGCa- -3'
miRNA:   3'- gaaCG-UGCCGC-GCgCUAGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 136362 0.66 0.754621
Target:  5'- --cGCugGGCGCug---CCgGCGCGAa -3'
miRNA:   3'- gaaCGugCCGCGcgcuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 10557 0.66 0.761971
Target:  5'- aCUUGCGCaGGCGCGCaacauaagcaaaAUCCUGgccaagucCGCGAc -3'
miRNA:   3'- -GAACGUG-CCGCGCGc-----------UAGGGC--------GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 42063 0.66 0.726521
Target:  5'- gUUGCccGCGGCGCGUGGcgUCagCUGCGCc- -3'
miRNA:   3'- gAACG--UGCCGCGCGCU--AG--GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 4498 0.66 0.754621
Target:  5'- --gGCGCGGUGCGgcCGcuuguGUUCCGCGUGc -3'
miRNA:   3'- gaaCGUGCCGCGC--GC-----UAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 123480 0.66 0.726521
Target:  5'- --gGCcucUGGCuGCGCGAUUCUGgGCGGg -3'
miRNA:   3'- gaaCGu--GCCG-CGCGCUAGGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 136283 0.66 0.716992
Target:  5'- gUUGCGCGGC-CGuCGuuaccGUCCCaGCGCa- -3'
miRNA:   3'- gAACGUGCCGcGC-GC-----UAGGG-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 158280 0.66 0.716992
Target:  5'- --gGCuCGGCuuGUGAUCCCgagacuugGCGCGAc -3'
miRNA:   3'- gaaCGuGCCGcgCGCUAGGG--------CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 48638 0.66 0.763798
Target:  5'- cCUUGCGCGG-GUGCcAUCCagaucCGCGAc -3'
miRNA:   3'- -GAACGUGCCgCGCGcUAGGgc---GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.