miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 159532 1.08 0.001443
Target:  5'- gCUUGCACGGCGCGCGAUCCCGCGCGAg -3'
miRNA:   3'- -GAACGUGCCGCGCGCUAGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39178 0.77 0.208421
Target:  5'- --gGCugGGCGCGCGAcucuaCCGCGCa- -3'
miRNA:   3'- gaaCGugCCGCGCGCUag---GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 74719 0.76 0.239452
Target:  5'- --gGCGCGGCGCGCGAaacugucUCCUGCuaGGu -3'
miRNA:   3'- gaaCGUGCCGCGCGCU-------AGGGCGcgCU- -5'
24335 3' -60.5 NC_005264.1 + 22846 0.75 0.275497
Target:  5'- --gGUACGGaCGgGCGAggCCGCGCGAa -3'
miRNA:   3'- gaaCGUGCC-GCgCGCUagGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 45682 0.74 0.322056
Target:  5'- --aGCACGuG-GCGCGAUCCCGgGgGAa -3'
miRNA:   3'- gaaCGUGC-CgCGCGCUAGGGCgCgCU- -5'
24335 3' -60.5 NC_005264.1 + 117014 0.74 0.327022
Target:  5'- -cUGCGCGGCgcaugacgaguacaGCGCGAUCa-GCGCGGc -3'
miRNA:   3'- gaACGUGCCG--------------CGCGCUAGggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 99908 0.73 0.36645
Target:  5'- --gGCGCGGCuugcggccGCGCaagCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGCCG--------CGCGcuaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 92963 0.73 0.373462
Target:  5'- aCUUGCugGGCGCgaaGCGcgUCCGCcguagggGCGAu -3'
miRNA:   3'- -GAACGugCCGCG---CGCuaGGGCG-------CGCU- -5'
24335 3' -60.5 NC_005264.1 + 119420 0.72 0.390175
Target:  5'- aCUUGCACucgcggcuGGCGgGCGAUCUCGCuGCc- -3'
miRNA:   3'- -GAACGUG--------CCGCgCGCUAGGGCG-CGcu -5'
24335 3' -60.5 NC_005264.1 + 63697 0.72 0.40654
Target:  5'- --gGCGCGGCaa--GGUCCCGUGCGAg -3'
miRNA:   3'- gaaCGUGCCGcgcgCUAGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 86491 0.72 0.398303
Target:  5'- --cGCGCcuGCGCGCaGUCgCCGCGCGGc -3'
miRNA:   3'- gaaCGUGc-CGCGCGcUAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 51781 0.72 0.390175
Target:  5'- --cGCGCGGCgGCacuucguccgGCGAgUCCGCGCGAg -3'
miRNA:   3'- gaaCGUGCCG-CG----------CGCUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 143774 0.72 0.382155
Target:  5'- -aUGCGCGGgaaGCGCGcuUCCCGCGgGu -3'
miRNA:   3'- gaACGUGCCg--CGCGCu-AGGGCGCgCu -5'
24335 3' -60.5 NC_005264.1 + 54416 0.72 0.423329
Target:  5'- gUUGCGCGGCGCGCcGA-CUaggGCGUGGg -3'
miRNA:   3'- gAACGUGCCGCGCG-CUaGGg--CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 39618 0.72 0.398303
Target:  5'- gCUUGCuccuagacACGGCGCuGUGGUUuugCCGCGCGGc -3'
miRNA:   3'- -GAACG--------UGCCGCG-CGCUAG---GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 117289 0.71 0.476072
Target:  5'- --cGUACGcGUGCGCGAugccgcucUCCgCGUGCGAc -3'
miRNA:   3'- gaaCGUGC-CGCGCGCU--------AGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 131597 0.71 0.431019
Target:  5'- -gUGUggagggaGCGGCGCGCGugggCgCGCGCGGa -3'
miRNA:   3'- gaACG-------UGCCGCGCGCua--GgGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 129917 0.71 0.458115
Target:  5'- ---aCGCGGCGCccccGCGAccCCUGCGCGAu -3'
miRNA:   3'- gaacGUGCCGCG----CGCUa-GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 54373 0.71 0.476072
Target:  5'- --cGCGCGGCcacCG-GAUcCCCGCGCGGa -3'
miRNA:   3'- gaaCGUGCCGc--GCgCUA-GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 114742 0.71 0.431878
Target:  5'- --cGCGC-GCGUGCaGAaCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGcCGCGCG-CUaGGGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.