Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24335 | 3' | -60.5 | NC_005264.1 | + | 114697 | 0.67 | 0.678289 |
Target: 5'- --aGCA-GGauuGCGCGGUCUCGUGCGc -3' miRNA: 3'- gaaCGUgCCg--CGCGCUAGGGCGCGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 113482 | 0.68 | 0.639021 |
Target: 5'- -gUGcCACGGuCGCGCGAgugCCaacCGCGAc -3' miRNA: 3'- gaAC-GUGCC-GCGCGCUa--GGgc-GCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 112268 | 0.66 | 0.763798 |
Target: 5'- --aGCGCcGCGUGCGcuUCCCGCacGCGc -3' miRNA: 3'- gaaCGUGcCGCGCGCu-AGGGCG--CGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 109984 | 0.69 | 0.570364 |
Target: 5'- -gUGCACGucguauGCGCGCaGcUCCCGCGUa- -3' miRNA: 3'- gaACGUGC------CGCGCG-CuAGGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 106082 | 0.67 | 0.707397 |
Target: 5'- cCUUGCuuGGCGUGCGugccaAUCUCGgccucCGCGGa -3' miRNA: 3'- -GAACGugCCGCGCGC-----UAGGGC-----GCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 103143 | 0.68 | 0.609491 |
Target: 5'- --gGCGCGGCGCGCGGcgCaaaGCGUa- -3' miRNA: 3'- gaaCGUGCCGCGCGCUa-Ggg-CGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 101339 | 0.67 | 0.707397 |
Target: 5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3' miRNA: 3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 99908 | 0.73 | 0.36645 |
Target: 5'- --gGCGCGGCuugcggccGCGCaagCCCGCGCGGc -3' miRNA: 3'- gaaCGUGCCG--------CGCGcuaGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 98329 | 0.66 | 0.726521 |
Target: 5'- --gGCGCGGacagaacaGCGCGGUCCaG-GCGAc -3' miRNA: 3'- gaaCGUGCCg-------CGCGCUAGGgCgCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 96892 | 0.68 | 0.639021 |
Target: 5'- --gGCaugGCGGCGCGCGAgg--GCGCGGc -3' miRNA: 3'- gaaCG---UGCCGCGCGCUagggCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 94415 | 0.69 | 0.551019 |
Target: 5'- --gGCGCGGacuGCGCGAUCgCUGaCGUGGg -3' miRNA: 3'- gaaCGUGCCg--CGCGCUAG-GGC-GCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 94067 | 0.66 | 0.753698 |
Target: 5'- --cGCuuUGGCGC-CGGcaacaugUCCCGCGUGAc -3' miRNA: 3'- gaaCGu-GCCGCGcGCU-------AGGGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 92963 | 0.73 | 0.373462 |
Target: 5'- aCUUGCugGGCGCgaaGCGcgUCCGCcguagggGCGAu -3' miRNA: 3'- -GAACGugCCGCG---CGCuaGGGCG-------CGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 91222 | 0.66 | 0.745343 |
Target: 5'- --cGCGCauuCGCGCGAUagCCCGCGUa- -3' miRNA: 3'- gaaCGUGcc-GCGCGCUA--GGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 88607 | 0.67 | 0.668505 |
Target: 5'- --aGCGCGGCcaGCGCGcua-CGUGCGAg -3' miRNA: 3'- gaaCGUGCCG--CGCGCuaggGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 86491 | 0.72 | 0.398303 |
Target: 5'- --cGCGCcuGCGCGCaGUCgCCGCGCGGc -3' miRNA: 3'- gaaCGUGc-CGCGCGcUAG-GGCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 84324 | 0.69 | 0.570364 |
Target: 5'- --gGCACGGCGCGaUGGUUacuggccucaCCGCGUGc -3' miRNA: 3'- gaaCGUGCCGCGC-GCUAG----------GGCGCGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 84323 | 0.67 | 0.688037 |
Target: 5'- --cGCcaGCGGCGCGUa--CCCaGCGCGGu -3' miRNA: 3'- gaaCG--UGCCGCGCGcuaGGG-CGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 82366 | 0.68 | 0.59967 |
Target: 5'- --gGCA-GGCGCGuCGAUCCgGUGCc- -3' miRNA: 3'- gaaCGUgCCGCGC-GCUAGGgCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 82049 | 0.69 | 0.560669 |
Target: 5'- -aUGCGCaGGCGCGCc-UCCUcuagaGCGCGGa -3' miRNA: 3'- gaACGUG-CCGCGCGcuAGGG-----CGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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