miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 148879 0.67 0.697742
Target:  5'- --cGCAucuuUGGCGCGCGcuuaucUCUCGCGCu- -3'
miRNA:   3'- gaaCGU----GCCGCGCGCu-----AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 149423 0.67 0.697742
Target:  5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3'
miRNA:   3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 52120 0.67 0.688037
Target:  5'- --aGCGCGugaGUGCGUGuUCCaGCGCGAu -3'
miRNA:   3'- gaaCGUGC---CGCGCGCuAGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 20026 0.67 0.658694
Target:  5'- ---cCACGGCGCGCucgcaCCCGUGCa- -3'
miRNA:   3'- gaacGUGCCGCGCGcua--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 68435 0.67 0.658694
Target:  5'- --cGCGCaguccGCGcCGCGGUCUgCGCGCGGa -3'
miRNA:   3'- gaaCGUGc----CGC-GCGCUAGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 37671 0.67 0.658694
Target:  5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3'
miRNA:   3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5'
24335 3' -60.5 NC_005264.1 + 40390 0.67 0.662621
Target:  5'- --aGCGCGG-GCGCGGcccuacgucccuccCCCGCGCa- -3'
miRNA:   3'- gaaCGUGCCgCGCGCUa-------------GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 33258 0.67 0.668505
Target:  5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3'
miRNA:   3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 3802 0.67 0.668505
Target:  5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3'
miRNA:   3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 114697 0.67 0.678289
Target:  5'- --aGCA-GGauuGCGCGGUCUCGUGCGc -3'
miRNA:   3'- gaaCGUgCCg--CGCGCUAGGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 84323 0.67 0.688037
Target:  5'- --cGCcaGCGGCGCGUa--CCCaGCGCGGu -3'
miRNA:   3'- gaaCG--UGCCGCGCGcuaGGG-CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 142503 0.67 0.688037
Target:  5'- --gGCACGGCGCGUu-UCCUGCuugcCGGu -3'
miRNA:   3'- gaaCGUGCCGCGCGcuAGGGCGc---GCU- -5'
24335 3' -60.5 NC_005264.1 + 30396 0.67 0.697742
Target:  5'- --gGCgGCGGCGguCGCGcgCCgGUGCGGa -3'
miRNA:   3'- gaaCG-UGCCGC--GCGCuaGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 133967 0.67 0.697742
Target:  5'- uCUU-CGCGGUG-GCGuUCgCCGCGCGGu -3'
miRNA:   3'- -GAAcGUGCCGCgCGCuAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 126890 0.67 0.697742
Target:  5'- --cGCcaucguCGGCGCGaaacaGGUCUCGCGCu- -3'
miRNA:   3'- gaaCGu-----GCCGCGCg----CUAGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 127835 0.67 0.697742
Target:  5'- gUUGCcuccGCGGCGgccgGCGGUCUagaacccggCGCGCGAa -3'
miRNA:   3'- gAACG----UGCCGCg---CGCUAGG---------GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 22007 0.67 0.668505
Target:  5'- --gGCGCGGCGCGUaGGUuuuuugCCCGCgaGCGu -3'
miRNA:   3'- gaaCGUGCCGCGCG-CUA------GGGCG--CGCu -5'
24335 3' -60.5 NC_005264.1 + 122828 0.67 0.668505
Target:  5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3'
miRNA:   3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 118288 0.67 0.678289
Target:  5'- --aGCACGGCGUuugacgucucgGUGAUguaCUCGCGCGc -3'
miRNA:   3'- gaaCGUGCCGCG-----------CGCUA---GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 152285 0.67 0.668505
Target:  5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3'
miRNA:   3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.