miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 71972 0.68 0.59967
Target:  5'- uUUGC-CGGCacagaauCGCGAUCCUaCGCGAg -3'
miRNA:   3'- gAACGuGCCGc------GCGCUAGGGcGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 82366 0.68 0.59967
Target:  5'- --gGCA-GGCGCGuCGAUCCgGUGCc- -3'
miRNA:   3'- gaaCGUgCCGCGC-GCUAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 78687 0.68 0.59967
Target:  5'- --gGCGCGcGCGCuGCGAccacuUCCCGgggcuCGCGAg -3'
miRNA:   3'- gaaCGUGC-CGCG-CGCU-----AGGGC-----GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 44260 0.68 0.609491
Target:  5'- -gUGCuguuCGGCGCGUcacgCCGCGCGGa -3'
miRNA:   3'- gaACGu---GCCGCGCGcuagGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 103143 0.68 0.609491
Target:  5'- --gGCGCGGCGCGCGGcgCaaaGCGUa- -3'
miRNA:   3'- gaaCGUGCCGCGCGCUa-Ggg-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 62932 0.68 0.619327
Target:  5'- gCUUGCGCGGC-CGC-AagCCGCGCc- -3'
miRNA:   3'- -GAACGUGCCGcGCGcUagGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 120198 0.68 0.619327
Target:  5'- -cUGC-CGGCGCGCGAUggggguaCGCaGCGGa -3'
miRNA:   3'- gaACGuGCCGCGCGCUAgg-----GCG-CGCU- -5'
24335 3' -60.5 NC_005264.1 + 1171 0.68 0.619327
Target:  5'- -cUGC-CGGCGCGCGAUggggguaCGCaGCGGa -3'
miRNA:   3'- gaACGuGCCGCGCGCUAgg-----GCG-CGCU- -5'
24335 3' -60.5 NC_005264.1 + 65458 0.68 0.629173
Target:  5'- -cUGCACGGCcUGCGggCCUGCGa-- -3'
miRNA:   3'- gaACGUGCCGcGCGCuaGGGCGCgcu -5'
24335 3' -60.5 NC_005264.1 + 113482 0.68 0.639021
Target:  5'- -gUGcCACGGuCGCGCGAgugCCaacCGCGAc -3'
miRNA:   3'- gaAC-GUGCC-GCGCGCUa--GGgc-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 52935 0.68 0.639021
Target:  5'- aUUGCAUGGC-CGCG--CCCGCGgCGc -3'
miRNA:   3'- gAACGUGCCGcGCGCuaGGGCGC-GCu -5'
24335 3' -60.5 NC_005264.1 + 96892 0.68 0.639021
Target:  5'- --gGCaugGCGGCGCGCGAgg--GCGCGGc -3'
miRNA:   3'- gaaCG---UGCCGCGCGCUagggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 47094 0.68 0.648864
Target:  5'- --gGCACGGCGagaguauaGCGcUCgCCGCGCc- -3'
miRNA:   3'- gaaCGUGCCGCg-------CGCuAG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 131715 0.68 0.648864
Target:  5'- -cUGCGCGGCGUugcugGCGcUCUgGCGCu- -3'
miRNA:   3'- gaACGUGCCGCG-----CGCuAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 14548 0.68 0.648864
Target:  5'- --cGCAC-GCGCGCGGucuccagaaucUCCCGC-CGGg -3'
miRNA:   3'- gaaCGUGcCGCGCGCU-----------AGGGCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 61919 0.68 0.648864
Target:  5'- --cGCACGG-GCGCcgccgCuuGCGCGAa -3'
miRNA:   3'- gaaCGUGCCgCGCGcua--GggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 20026 0.67 0.658694
Target:  5'- ---cCACGGCGCGCucgcaCCCGUGCa- -3'
miRNA:   3'- gaacGUGCCGCGCGcua--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 37671 0.67 0.658694
Target:  5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3'
miRNA:   3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5'
24335 3' -60.5 NC_005264.1 + 68435 0.67 0.658694
Target:  5'- --cGCGCaguccGCGcCGCGGUCUgCGCGCGGa -3'
miRNA:   3'- gaaCGUGc----CGC-GCGCUAGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 58119 0.67 0.658694
Target:  5'- --gGCGCuGCuGCGCGAcCUCGCGCa- -3'
miRNA:   3'- gaaCGUGcCG-CGCGCUaGGGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.