miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 48665 0.66 0.763798
Target:  5'- --gGCACGGgGgGCGAggagaUCUgGgCGCGAg -3'
miRNA:   3'- gaaCGUGCCgCgCGCU-----AGGgC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 49342 0.66 0.763798
Target:  5'- -gUGUACGaGgGuCGCGGUuggcaCUCGCGCGAc -3'
miRNA:   3'- gaACGUGC-CgC-GCGCUA-----GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 51781 0.72 0.390175
Target:  5'- --cGCGCGGCgGCacuucguccgGCGAgUCCGCGCGAg -3'
miRNA:   3'- gaaCGUGCCG-CG----------CGCUaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 52120 0.67 0.688037
Target:  5'- --aGCGCGugaGUGCGUGuUCCaGCGCGAu -3'
miRNA:   3'- gaaCGUGC---CGCGCGCuAGGgCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 52935 0.68 0.639021
Target:  5'- aUUGCAUGGC-CGCG--CCCGCGgCGc -3'
miRNA:   3'- gAACGUGCCGcGCGCuaGGGCGC-GCu -5'
24335 3' -60.5 NC_005264.1 + 53257 0.66 0.763798
Target:  5'- --cGCG-GGCGCGUGucuggcuugcuGUCCCGCGgCGc -3'
miRNA:   3'- gaaCGUgCCGCGCGC-----------UAGGGCGC-GCu -5'
24335 3' -60.5 NC_005264.1 + 54373 0.71 0.476072
Target:  5'- --cGCGCGGCcacCG-GAUcCCCGCGCGGa -3'
miRNA:   3'- gaaCGUGCCGc--GCgCUA-GGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 54416 0.72 0.423329
Target:  5'- gUUGCGCGGCGCGCcGA-CUaggGCGUGGg -3'
miRNA:   3'- gAACGUGCCGCGCG-CUaGGg--CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 58119 0.67 0.658694
Target:  5'- --gGCGCuGCuGCGCGAcCUCGCGCa- -3'
miRNA:   3'- gaaCGUGcCG-CGCGCUaGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 59025 0.66 0.745343
Target:  5'- --gGCA-GGCGCGUcaggucGGUCuCCGCGCa- -3'
miRNA:   3'- gaaCGUgCCGCGCG------CUAG-GGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 61919 0.68 0.648864
Target:  5'- --cGCACGG-GCGCcgccgCuuGCGCGAa -3'
miRNA:   3'- gaaCGUGCCgCGCGcua--GggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 62932 0.68 0.619327
Target:  5'- gCUUGCGCGGC-CGC-AagCCGCGCc- -3'
miRNA:   3'- -GAACGUGCCGcGCGcUagGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 63697 0.72 0.40654
Target:  5'- --gGCGCGGCaa--GGUCCCGUGCGAg -3'
miRNA:   3'- gaaCGUGCCGcgcgCUAGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 64145 0.71 0.431878
Target:  5'- --cGcCACGGCGcCGCGAUCCgGC-CGGu -3'
miRNA:   3'- gaaC-GUGCCGC-GCGCUAGGgCGcGCU- -5'
24335 3' -60.5 NC_005264.1 + 64732 0.66 0.735974
Target:  5'- --gGCuCGGCGC-CGugcCCCGCGCa- -3'
miRNA:   3'- gaaCGuGCCGCGcGCua-GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 65458 0.68 0.629173
Target:  5'- -cUGCACGGCcUGCGggCCUGCGa-- -3'
miRNA:   3'- gaACGUGCCGcGCGCuaGGGCGCgcu -5'
24335 3' -60.5 NC_005264.1 + 65607 0.69 0.5801
Target:  5'- uCUUGCugcugcguucGCGGCuCGUGGguaCCCGCGCGc -3'
miRNA:   3'- -GAACG----------UGCCGcGCGCUa--GGGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 66503 0.7 0.50364
Target:  5'- -cUGCGCGGCGCGCucGAcgagcucgcUUUCGCGCa- -3'
miRNA:   3'- gaACGUGCCGCGCG--CU---------AGGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 68435 0.67 0.658694
Target:  5'- --cGCGCaguccGCGcCGCGGUCUgCGCGCGGa -3'
miRNA:   3'- gaaCGUGc----CGC-GCGCUAGG-GCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 71972 0.68 0.59967
Target:  5'- uUUGC-CGGCacagaauCGCGAUCCUaCGCGAg -3'
miRNA:   3'- gAACGuGCCGc------GCGCUAGGGcGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.