miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 3' -60.5 NC_005264.1 + 72589 0.67 0.678289
Target:  5'- --gGCugGGCGCGCGAUgaaGUGCu- -3'
miRNA:   3'- gaaCGugCCGCGCGCUAgggCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 74719 0.76 0.239452
Target:  5'- --gGCGCGGCGCGCGAaacugucUCCUGCuaGGu -3'
miRNA:   3'- gaaCGUGCCGCGCGCU-------AGGGCGcgCU- -5'
24335 3' -60.5 NC_005264.1 + 75230 0.67 0.665564
Target:  5'- -cUGCGCGGCGgccgucuuguauaaCGCGA-CCaCGCGCc- -3'
miRNA:   3'- gaACGUGCCGC--------------GCGCUaGG-GCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 78687 0.68 0.59967
Target:  5'- --gGCGCGcGCGCuGCGAccacuUCCCGgggcuCGCGAg -3'
miRNA:   3'- gaaCGUGC-CGCG-CGCU-----AGGGC-----GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 82049 0.69 0.560669
Target:  5'- -aUGCGCaGGCGCGCc-UCCUcuagaGCGCGGa -3'
miRNA:   3'- gaACGUG-CCGCGCGcuAGGG-----CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 82366 0.68 0.59967
Target:  5'- --gGCA-GGCGCGuCGAUCCgGUGCc- -3'
miRNA:   3'- gaaCGUgCCGCGC-GCUAGGgCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 84323 0.67 0.688037
Target:  5'- --cGCcaGCGGCGCGUa--CCCaGCGCGGu -3'
miRNA:   3'- gaaCG--UGCCGCGCGcuaGGG-CGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 84324 0.69 0.570364
Target:  5'- --gGCACGGCGCGaUGGUUacuggccucaCCGCGUGc -3'
miRNA:   3'- gaaCGUGCCGCGC-GCUAG----------GGCGCGCu -5'
24335 3' -60.5 NC_005264.1 + 86491 0.72 0.398303
Target:  5'- --cGCGCcuGCGCGCaGUCgCCGCGCGGc -3'
miRNA:   3'- gaaCGUGc-CGCGCGcUAG-GGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 88607 0.67 0.668505
Target:  5'- --aGCGCGGCcaGCGCGcua-CGUGCGAg -3'
miRNA:   3'- gaaCGUGCCG--CGCGCuaggGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 91222 0.66 0.745343
Target:  5'- --cGCGCauuCGCGCGAUagCCCGCGUa- -3'
miRNA:   3'- gaaCGUGcc-GCGCGCUA--GGGCGCGcu -5'
24335 3' -60.5 NC_005264.1 + 92963 0.73 0.373462
Target:  5'- aCUUGCugGGCGCgaaGCGcgUCCGCcguagggGCGAu -3'
miRNA:   3'- -GAACGugCCGCG---CGCuaGGGCG-------CGCU- -5'
24335 3' -60.5 NC_005264.1 + 94067 0.66 0.753698
Target:  5'- --cGCuuUGGCGC-CGGcaacaugUCCCGCGUGAc -3'
miRNA:   3'- gaaCGu-GCCGCGcGCU-------AGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 94415 0.69 0.551019
Target:  5'- --gGCGCGGacuGCGCGAUCgCUGaCGUGGg -3'
miRNA:   3'- gaaCGUGCCg--CGCGCUAG-GGC-GCGCU- -5'
24335 3' -60.5 NC_005264.1 + 96892 0.68 0.639021
Target:  5'- --gGCaugGCGGCGCGCGAgg--GCGCGGc -3'
miRNA:   3'- gaaCG---UGCCGCGCGCUagggCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 98329 0.66 0.726521
Target:  5'- --gGCGCGGacagaacaGCGCGGUCCaG-GCGAc -3'
miRNA:   3'- gaaCGUGCCg-------CGCGCUAGGgCgCGCU- -5'
24335 3' -60.5 NC_005264.1 + 99908 0.73 0.36645
Target:  5'- --gGCGCGGCuugcggccGCGCaagCCCGCGCGGc -3'
miRNA:   3'- gaaCGUGCCG--------CGCGcuaGGGCGCGCU- -5'
24335 3' -60.5 NC_005264.1 + 101339 0.67 0.707397
Target:  5'- --cGCGCGGCGCuagcCGAgaCCGCGgGGc -3'
miRNA:   3'- gaaCGUGCCGCGc---GCUagGGCGCgCU- -5'
24335 3' -60.5 NC_005264.1 + 103143 0.68 0.609491
Target:  5'- --gGCGCGGCGCGCGGcgCaaaGCGUa- -3'
miRNA:   3'- gaaCGUGCCGCGCGCUa-Ggg-CGCGcu -5'
24335 3' -60.5 NC_005264.1 + 106082 0.67 0.707397
Target:  5'- cCUUGCuuGGCGUGCGugccaAUCUCGgccucCGCGGa -3'
miRNA:   3'- -GAACGugCCGCGCGC-----UAGGGC-----GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.