Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24335 | 3' | -60.5 | NC_005264.1 | + | 156697 | 0.67 | 0.658694 |
Target: 5'- -aUGCGCgacgGGCGCGCGGcccucgcccUCCCGCa--- -3' miRNA: 3'- gaACGUG----CCGCGCGCU---------AGGGCGcgcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 152285 | 0.67 | 0.668505 |
Target: 5'- --aGCAgCGGCgaacGCGCGAUCC-GCGCc- -3' miRNA: 3'- gaaCGU-GCCG----CGCGCUAGGgCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 22007 | 0.67 | 0.668505 |
Target: 5'- --gGCGCGGCGCGUaGGUuuuuugCCCGCgaGCGu -3' miRNA: 3'- gaaCGUGCCGCGCG-CUA------GGGCG--CGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 122828 | 0.67 | 0.668505 |
Target: 5'- -cUGCGUGGCGgucCGCGAguucgggCCCGgGCGGg -3' miRNA: 3'- gaACGUGCCGC---GCGCUa------GGGCgCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 118288 | 0.67 | 0.678289 |
Target: 5'- --aGCACGGCGUuugacgucucgGUGAUguaCUCGCGCGc -3' miRNA: 3'- gaaCGUGCCGCG-----------CGCUA---GGGCGCGCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 72589 | 0.67 | 0.678289 |
Target: 5'- --gGCugGGCGCGCGAUgaaGUGCu- -3' miRNA: 3'- gaaCGugCCGCGCGCUAgggCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 52120 | 0.67 | 0.688037 |
Target: 5'- --aGCGCGugaGUGCGUGuUCCaGCGCGAu -3' miRNA: 3'- gaaCGUGC---CGCGCGCuAGGgCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 75230 | 0.67 | 0.665564 |
Target: 5'- -cUGCGCGGCGgccgucuuguauaaCGCGA-CCaCGCGCc- -3' miRNA: 3'- gaACGUGCCGC--------------GCGCUaGG-GCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 14548 | 0.68 | 0.648864 |
Target: 5'- --cGCAC-GCGCGCGGucuccagaaucUCCCGC-CGGg -3' miRNA: 3'- gaaCGUGcCGCGCGCU-----------AGGGCGcGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 131715 | 0.68 | 0.648864 |
Target: 5'- -cUGCGCGGCGUugcugGCGcUCUgGCGCu- -3' miRNA: 3'- gaACGUGCCGCG-----CGCuAGGgCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 61919 | 0.68 | 0.648864 |
Target: 5'- --cGCACGG-GCGCcgccgCuuGCGCGAa -3' miRNA: 3'- gaaCGUGCCgCGCGcua--GggCGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 142041 | 0.68 | 0.59967 |
Target: 5'- -gUGCAUGGCGUGCacgguUCCCccgGCGCa- -3' miRNA: 3'- gaACGUGCCGCGCGcu---AGGG---CGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 65458 | 0.68 | 0.629173 |
Target: 5'- -cUGCACGGCcUGCGggCCUGCGa-- -3' miRNA: 3'- gaACGUGCCGcGCGCuaGGGCGCgcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 120198 | 0.68 | 0.619327 |
Target: 5'- -cUGC-CGGCGCGCGAUggggguaCGCaGCGGa -3' miRNA: 3'- gaACGuGCCGCGCGCUAgg-----GCG-CGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 62932 | 0.68 | 0.619327 |
Target: 5'- gCUUGCGCGGC-CGC-AagCCGCGCc- -3' miRNA: 3'- -GAACGUGCCGcGCGcUagGGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 71972 | 0.68 | 0.59967 |
Target: 5'- uUUGC-CGGCacagaauCGCGAUCCUaCGCGAg -3' miRNA: 3'- gAACGuGCCGc------GCGCUAGGGcGCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 52935 | 0.68 | 0.639021 |
Target: 5'- aUUGCAUGGC-CGCG--CCCGCGgCGc -3' miRNA: 3'- gAACGUGCCGcGCGCuaGGGCGC-GCu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 16560 | 0.68 | 0.59967 |
Target: 5'- --aGCGCGGUGgGCGGcgCCgGgGCGGc -3' miRNA: 3'- gaaCGUGCCGCgCGCUa-GGgCgCGCU- -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 47094 | 0.68 | 0.648864 |
Target: 5'- --gGCACGGCGagaguauaGCGcUCgCCGCGCc- -3' miRNA: 3'- gaaCGUGCCGCg-------CGCuAG-GGCGCGcu -5' |
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24335 | 3' | -60.5 | NC_005264.1 | + | 113482 | 0.68 | 0.639021 |
Target: 5'- -gUGcCACGGuCGCGCGAgugCCaacCGCGAc -3' miRNA: 3'- gaAC-GUGCC-GCGCGCUa--GGgc-GCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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