miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 5' -58.5 NC_005264.1 + 161213 0.71 0.500488
Target:  5'- -aUGGCagGUUGGA-GCCgCGCCCACCGGc -3'
miRNA:   3'- agACCG--CGACUUaCGG-GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 160338 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 159835 0.69 0.618638
Target:  5'- --gGGCGCUGGAUGauuagCGCCgGCCGGu -3'
miRNA:   3'- agaCCGCGACUUACgg---GUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 159567 1.09 0.001729
Target:  5'- cUCUGGCGCUGAAUGCCCACCCACCGAg -3'
miRNA:   3'- -AGACCGCGACUUACGGGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 156297 0.69 0.668917
Target:  5'- --aGGCGCUccugccGAAgccCCCugCCGCCGAu -3'
miRNA:   3'- agaCCGCGA------CUUac-GGGugGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 153878 0.68 0.698801
Target:  5'- uUUUGGUGCUGcagcGAguugGCCgGCCCgaagGCCGAg -3'
miRNA:   3'- -AGACCGCGAC----UUa---CGGgUGGG----UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 151400 0.67 0.737846
Target:  5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3'
miRNA:   3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 146286 0.66 0.802409
Target:  5'- --cGGCGCc----GCCCACCgCGCUGAa -3'
miRNA:   3'- agaCCGCGacuuaCGGGUGG-GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 138252 0.66 0.819639
Target:  5'- --aGGCGCUGu-UGgUCACCauCGCCGAg -3'
miRNA:   3'- agaCCGCGACuuACgGGUGG--GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 136452 0.66 0.802409
Target:  5'- --gGGCGCUGAG-GCCgCGCUCAgaGAc -3'
miRNA:   3'- agaCCGCGACUUaCGG-GUGGGUggCU- -5'
24335 5' -58.5 NC_005264.1 + 133745 0.67 0.780951
Target:  5'- --cGGCGCUGGGaGCCUAUacgcagacaucuaCGCCGAg -3'
miRNA:   3'- agaCCGCGACUUaCGGGUGg------------GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 131277 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 123428 0.74 0.393346
Target:  5'- cUCcGGCGCUGAgcagcgcaGUGCCC-CCUucGCCGAc -3'
miRNA:   3'- -AGaCCGCGACU--------UACGGGuGGG--UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 122794 0.66 0.82801
Target:  5'- --gGGCGCUGcggGCCCuuggucgacCgCCGCCGAu -3'
miRNA:   3'- agaCCGCGACuuaCGGGu--------G-GGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 116074 0.67 0.737846
Target:  5'- gUUUGuGCGCcGcGUGCCCAUCUACCc- -3'
miRNA:   3'- -AGAC-CGCGaCuUACGGGUGGGUGGcu -5'
24335 5' -58.5 NC_005264.1 + 104989 0.69 0.618638
Target:  5'- cUCUGGCGCUGAcgaccguuUGCagcgCACCgGCCa- -3'
miRNA:   3'- -AGACCGCGACUu-------ACGg---GUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 98149 0.69 0.638773
Target:  5'- uUCgGGCGagcAcgGCCUGCCCGCCGGc -3'
miRNA:   3'- -AGaCCGCgacUuaCGGGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 96637 0.75 0.323397
Target:  5'- gCUGGcCGCgGAGgcGCaCCGCCCGCCGAu -3'
miRNA:   3'- aGACC-GCGaCUUa-CG-GGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 96377 0.66 0.819639
Target:  5'- gUCUGGcCGCggcGGUGCCaucucCCCAUCGGa -3'
miRNA:   3'- -AGACC-GCGac-UUACGGgu---GGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 94948 0.67 0.784582
Target:  5'- cUCcgGGCGCUuGGUgGCaCUACCCgACCGAg -3'
miRNA:   3'- -AGa-CCGCGAcUUA-CG-GGUGGG-UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.