Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24335 | 5' | -58.5 | NC_005264.1 | + | 56511 | 0.68 | 0.678919 |
Target: 5'- gCUGGgGCUcuguggagGggUcGCCCuGCCCGCCGc -3' miRNA: 3'- aGACCgCGA--------CuuA-CGGG-UGGGUGGCu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 58475 | 0.68 | 0.718466 |
Target: 5'- gUCUGGgaaCGcCUGAcgGUCgGCCCGCCuGAg -3' miRNA: 3'- -AGACC---GC-GACUuaCGGgUGGGUGG-CU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 32373 | 0.67 | 0.737846 |
Target: 5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3' miRNA: 3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 153878 | 0.68 | 0.698801 |
Target: 5'- uUUUGGUGCUGcagcGAguugGCCgGCCCgaagGCCGAg -3' miRNA: 3'- -AGACCGCGAC----UUa---CGGgUGGG----UGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 81512 | 0.68 | 0.688882 |
Target: 5'- cCUGGCGg-GAAgcgGCUCACCUGCaCGAu -3' miRNA: 3'- aGACCGCgaCUUa--CGGGUGGGUG-GCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 37270 | 0.69 | 0.668917 |
Target: 5'- --aGGCGCUccugccGAAgccCCCugCCGCCGAu -3' miRNA: 3'- agaCCGCGA------CUUac-GGGugGGUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 98149 | 0.69 | 0.638773 |
Target: 5'- uUCgGGCGagcAcgGCCUGCCCGCCGGc -3' miRNA: 3'- -AGaCCGCgacUuaCGGGUGGGUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 40809 | 0.69 | 0.618638 |
Target: 5'- --gGGCGCUGGAUGauuagCGCCgGCCGGu -3' miRNA: 3'- agaCCGCGACUUACgg---GUGGgUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 76348 | 0.7 | 0.608582 |
Target: 5'- --gGGCGCUGGAgggcgaGCCUgaACCCACUGc -3' miRNA: 3'- agaCCGCGACUUa-----CGGG--UGGGUGGCu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 64350 | 0.7 | 0.608582 |
Target: 5'- aCUGuaGCGCUGAggagAUGCCCucgcgcguGCCgGCCGGg -3' miRNA: 3'- aGAC--CGCGACU----UACGGG--------UGGgUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 116074 | 0.67 | 0.737846 |
Target: 5'- gUUUGuGCGCcGcGUGCCCAUCUACCc- -3' miRNA: 3'- -AGAC-CGCGaCuUACGGGUGGGUGGcu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 41311 | 0.67 | 0.737846 |
Target: 5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3' miRNA: 3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 159567 | 1.09 | 0.001729 |
Target: 5'- cUCUGGCGCUGAAUGCCCACCCACCGAg -3' miRNA: 3'- -AGACCGCGACUUACGGGUGGGUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 138252 | 0.66 | 0.819639 |
Target: 5'- --aGGCGCUGu-UGgUCACCauCGCCGAg -3' miRNA: 3'- agaCCGCGACuuACgGGUGG--GUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 53990 | 0.66 | 0.811103 |
Target: 5'- cUCUGuuuaagaagucGCGCgUGGAUGCCUACUUGCgCGAc -3' miRNA: 3'- -AGAC-----------CGCG-ACUUACGGGUGGGUG-GCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 146286 | 0.66 | 0.802409 |
Target: 5'- --cGGCGCc----GCCCACCgCGCUGAa -3' miRNA: 3'- agaCCGCGacuuaCGGGUGG-GUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 84949 | 0.66 | 0.802409 |
Target: 5'- -gUGGCGCcGggUGCUCGCUUgcgGCCa- -3' miRNA: 3'- agACCGCGaCuuACGGGUGGG---UGGcu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 69586 | 0.67 | 0.756869 |
Target: 5'- cCUGGCGCcaccuaGCCCGCUUGCUGGu -3' miRNA: 3'- aGACCGCGacuua-CGGGUGGGUGGCU- -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 12250 | 0.67 | 0.754041 |
Target: 5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3' miRNA: 3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5' |
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24335 | 5' | -58.5 | NC_005264.1 | + | 91512 | 0.67 | 0.747406 |
Target: 5'- --cGGCGUaGAAUGCCgcgCACUCGCCa- -3' miRNA: 3'- agaCCGCGaCUUACGG---GUGGGUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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