miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 5' -58.5 NC_005264.1 + 81512 0.68 0.688882
Target:  5'- cCUGGCGg-GAAgcgGCUCACCUGCaCGAu -3'
miRNA:   3'- aGACCGCgaCUUa--CGGGUGGGUG-GCU- -5'
24335 5' -58.5 NC_005264.1 + 153878 0.68 0.698801
Target:  5'- uUUUGGUGCUGcagcGAguugGCCgGCCCgaagGCCGAg -3'
miRNA:   3'- -AGACCGCGAC----UUa---CGGgUGGG----UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 58475 0.68 0.718466
Target:  5'- gUCUGGgaaCGcCUGAcgGUCgGCCCGCCuGAg -3'
miRNA:   3'- -AGACC---GC-GACUuaCGGgUGGGUGG-CU- -5'
24335 5' -58.5 NC_005264.1 + 73380 0.68 0.727227
Target:  5'- uUUUGGCGCggcucUGCCaagccaaCACCCGCUGAc -3'
miRNA:   3'- -AGACCGCGacuu-ACGG-------GUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 116074 0.67 0.737846
Target:  5'- gUUUGuGCGCcGcGUGCCCAUCUACCc- -3'
miRNA:   3'- -AGAC-CGCGaCuUACGGGUGGGUGGcu -5'
24335 5' -58.5 NC_005264.1 + 32373 0.67 0.737846
Target:  5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3'
miRNA:   3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 160338 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 41311 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 151400 0.67 0.737846
Target:  5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3'
miRNA:   3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 91512 0.67 0.747406
Target:  5'- --cGGCGUaGAAUGCCgcgCACUCGCCa- -3'
miRNA:   3'- agaCCGCGaCUUACGG---GUGGGUGGcu -5'
24335 5' -58.5 NC_005264.1 + 12250 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 131277 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 69586 0.67 0.756869
Target:  5'- cCUGGCGCcaccuaGCCCGCUUGCUGGu -3'
miRNA:   3'- aGACCGCGacuua-CGGGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 64509 0.67 0.756869
Target:  5'- cCUGgaccGCGCUGuucUGUCCGCgCCGCCGc -3'
miRNA:   3'- aGAC----CGCGACuu-ACGGGUG-GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 18186 0.67 0.775465
Target:  5'- --cGGCGCaaGAAUGCCgGCUaACCGGu -3'
miRNA:   3'- agaCCGCGa-CUUACGGgUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 25010 0.67 0.775465
Target:  5'- cUCaGGCGCUGcAUGCCUcuccugaggcGCCCGgCCa- -3'
miRNA:   3'- -AGaCCGCGACuUACGGG----------UGGGU-GGcu -5'
24335 5' -58.5 NC_005264.1 + 133745 0.67 0.780951
Target:  5'- --cGGCGCUGGGaGCCUAUacgcagacaucuaCGCCGAg -3'
miRNA:   3'- agaCCGCGACUUaCGGGUGg------------GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 94948 0.67 0.784582
Target:  5'- cUCcgGGCGCUuGGUgGCaCUACCCgACCGAg -3'
miRNA:   3'- -AGa-CCGCGAcUUA-CG-GGUGGG-UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 146286 0.66 0.802409
Target:  5'- --cGGCGCc----GCCCACCgCGCUGAa -3'
miRNA:   3'- agaCCGCGacuuaCGGGUGG-GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 84949 0.66 0.802409
Target:  5'- -gUGGCGCcGggUGCUCGCUUgcgGCCa- -3'
miRNA:   3'- agACCGCGaCuuACGGGUGGG---UGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.