Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24336 | 3' | -56.7 | NC_005264.1 | + | 12303 | 0.66 | 0.881067 |
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Target: 5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3' miRNA: 3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 91738 | 0.66 | 0.881067 |
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Target: 5'- -cUCACCAgGGCCgaggGCggCugUUGACAa -3' miRNA: 3'- caGGUGGUgCCGGa---UGa-GugGACUGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 131330 | 0.66 | 0.881067 |
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Target: 5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3' miRNA: 3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 60621 | 0.66 | 0.881067 |
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Target: 5'- aGUUCugUGCGGCCcuauCUCGCgaGGCGa -3' miRNA: 3'- -CAGGugGUGCCGGau--GAGUGgaCUGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 3609 | 0.66 | 0.894661 |
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Target: 5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3' miRNA: 3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 57605 | 0.66 | 0.894661 |
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Target: 5'- cGUUUgcuCCGCGGCCUGCUCGCagucGuACAc -3' miRNA: 3'- -CAGGu--GGUGCCGGAUGAGUGga--C-UGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 122636 | 0.66 | 0.894661 |
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Target: 5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3' miRNA: 3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 110719 | 0.66 | 0.894661 |
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Target: 5'- cUCCAUCACcggaGGCCUccuGCUCGCUUcGCGg -3' miRNA: 3'- cAGGUGGUG----CCGGA---UGAGUGGAcUGU- -5' |
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| 24336 | 3' | -56.7 | NC_005264.1 | + | 20034 | 0.66 | 0.894661 |
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Target: 5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3' miRNA: 3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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