Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24336 | 3' | -56.7 | NC_005264.1 | + | 128903 | 0.69 | 0.715612 |
Target: 5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3' miRNA: 3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 9877 | 0.69 | 0.715612 |
Target: 5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3' miRNA: 3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 110162 | 0.69 | 0.74499 |
Target: 5'- -cCCGCCGCGGCUUugggGC-CuauCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGGA----UGaGu--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 6227 | 0.69 | 0.754599 |
Target: 5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3' miRNA: 3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 125254 | 0.69 | 0.754599 |
Target: 5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3' miRNA: 3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 26050 | 0.68 | 0.764101 |
Target: 5'- uGUCCGCC-CGGCC-ACgCGCCgaaagGACu -3' miRNA: 3'- -CAGGUGGuGCCGGaUGaGUGGa----CUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 36731 | 0.68 | 0.773486 |
Target: 5'- -gCCGCCGCGcauuccuugcccGCCUACUgGCCaGACu -3' miRNA: 3'- caGGUGGUGC------------CGGAUGAgUGGaCUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 64441 | 0.68 | 0.773486 |
Target: 5'- cGUCUGCCGCGGCuCUaACUC-CCUGu-- -3' miRNA: 3'- -CAGGUGGUGCCG-GA-UGAGuGGACugu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 62980 | 0.68 | 0.800854 |
Target: 5'- -gCCACCGCGGCUUuggcggACUCcaaggcguGCUUGGCGc -3' miRNA: 3'- caGGUGGUGCCGGA------UGAG--------UGGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 126412 | 0.67 | 0.818357 |
Target: 5'- cGUCU-CCGCGGCCUGCaggUACUUGGg- -3' miRNA: 3'- -CAGGuGGUGCCGGAUGa--GUGGACUgu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 3165 | 0.67 | 0.835187 |
Target: 5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3' miRNA: 3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 66830 | 0.67 | 0.843332 |
Target: 5'- -gCCACCuacuucGCGGCCUGCaUCACUcuagaUGAUg -3' miRNA: 3'- caGGUGG------UGCCGGAUG-AGUGG-----ACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 144234 | 0.67 | 0.851285 |
Target: 5'- cGUCCGCUGCGGUCUucuccggcugcuACcgCACC-GACAc -3' miRNA: 3'- -CAGGUGGUGCCGGA------------UGa-GUGGaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 69848 | 0.67 | 0.856736 |
Target: 5'- -cCCGCUACGGCCggUGCUgCGgcgcguggugauccCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGG--AUGA-GU--------------GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 20020 | 0.67 | 0.859042 |
Target: 5'- gGUCUACCACGGCgcGCUCGCacccguGCAg -3' miRNA: 3'- -CAGGUGGUGCCGgaUGAGUGgac---UGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 98154 | 0.66 | 0.866595 |
Target: 5'- -gCgAgCACGGCCUGCcCGCC-GGCAg -3' miRNA: 3'- caGgUgGUGCCGGAUGaGUGGaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 51102 | 0.66 | 0.866595 |
Target: 5'- -gCCgguGCUGCGGUCUGCUCgcGCCUcGACGc -3' miRNA: 3'- caGG---UGGUGCCGGAUGAG--UGGA-CUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 136692 | 0.66 | 0.866595 |
Target: 5'- aGUCCucGCCGCGGCCUGggaCAUCaUGGCc -3' miRNA: 3'- -CAGG--UGGUGCCGGAUga-GUGG-ACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 73664 | 0.66 | 0.873938 |
Target: 5'- -gCCGCCgggACGacCCUACUUGCCUGGCc -3' miRNA: 3'- caGGUGG---UGCc-GGAUGAGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 87031 | 0.66 | 0.879659 |
Target: 5'- -aCCACCGCGcGCCUACggacggcgacgACCUGGa- -3' miRNA: 3'- caGGUGGUGC-CGGAUGag---------UGGACUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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