Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24337 | 3' | -56.6 | NC_005264.1 | + | 45409 | 0.68 | 0.798236 |
Target: 5'- gAGGGcGGCGCC-CUgcgcgcCGCGACAGCCc -3' miRNA: 3'- gUCCC-UCGUGGaGGa-----GCGUUGUUGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 20253 | 0.68 | 0.807088 |
Target: 5'- gCAGGGguugcGGCGCggCCUCGCGGagggGACCGu -3' miRNA: 3'- -GUCCC-----UCGUGgaGGAGCGUUg---UUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 131773 | 0.68 | 0.81492 |
Target: 5'- gAGGGAGgcucgcuCGCCUgCCgucCGCAacGCAGCCGc -3' miRNA: 3'- gUCCCUC-------GUGGA-GGa--GCGU--UGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 12747 | 0.68 | 0.81492 |
Target: 5'- gAGGGAGgcucgcuCGCCUgCCgucCGCAacGCAGCCGc -3' miRNA: 3'- gUCCCUC-------GUGGA-GGa--GCGU--UGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 85442 | 0.68 | 0.815783 |
Target: 5'- aCAGGGAGCGCUUgCCggCGUcugGGCCGa -3' miRNA: 3'- -GUCCCUCGUGGA-GGa-GCGuugUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 17830 | 0.68 | 0.815783 |
Target: 5'- gAGGGGGCuagauCCUCCaucUCGCGcgcgcuguuCGACCGc -3' miRNA: 3'- gUCCCUCGu----GGAGG---AGCGUu--------GUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 106750 | 0.68 | 0.815783 |
Target: 5'- gGGGGAGcCGCCUguuucCCUCGUccuACGGCUa -3' miRNA: 3'- gUCCCUC-GUGGA-----GGAGCGu--UGUUGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 37579 | 0.67 | 0.832671 |
Target: 5'- gAGGcGGCAag-UCUCGCGGCGGCCGc -3' miRNA: 3'- gUCCcUCGUggaGGAGCGUUGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 156606 | 0.67 | 0.832671 |
Target: 5'- gAGGcGGCAag-UCUCGCGGCGGCCGc -3' miRNA: 3'- gUCCcUCGUggaGGAGCGUUGUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 38940 | 0.67 | 0.848839 |
Target: 5'- --cGGAGaccccuauCUUCCUCGCAGCGugGCCGa -3' miRNA: 3'- gucCCUCgu------GGAGGAGCGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 38361 | 0.67 | 0.848839 |
Target: 5'- gCGGGGcgguuAGgACCUCCUCcggcgagaGCGGCGacGCCGa -3' miRNA: 3'- -GUCCC-----UCgUGGAGGAG--------CGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 157388 | 0.67 | 0.848839 |
Target: 5'- gCGGGGcgguuAGgACCUCCUCcggcgagaGCGGCGacGCCGa -3' miRNA: 3'- -GUCCC-----UCgUGGAGGAG--------CGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 157967 | 0.67 | 0.848839 |
Target: 5'- --cGGAGaccccuauCUUCCUCGCAGCGugGCCGa -3' miRNA: 3'- gucCCUCgu------GGAGGAGCGUUGU--UGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 987 | 0.67 | 0.856636 |
Target: 5'- gCAGGuGGGCcuCCcCCUCGCG--GACCGg -3' miRNA: 3'- -GUCC-CUCGu-GGaGGAGCGUugUUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 3723 | 0.67 | 0.864232 |
Target: 5'- gCGGGcGGGCuucuCCgacgUCUCGCGAUcGCCGg -3' miRNA: 3'- -GUCC-CUCGu---GGa---GGAGCGUUGuUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 30522 | 0.67 | 0.864232 |
Target: 5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3' miRNA: 3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 149549 | 0.67 | 0.864232 |
Target: 5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3' miRNA: 3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 66722 | 0.66 | 0.870892 |
Target: 5'- cCGGGGAGCaacaagcGCCggcgCCUaaacCGCGGCAACa- -3' miRNA: 3'- -GUCCCUCG-------UGGa---GGA----GCGUUGUUGgc -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 14372 | 0.66 | 0.871621 |
Target: 5'- uCAuGGAGCGCUUcauucCCUCGCGGgcGCCGg -3' miRNA: 3'- -GUcCCUCGUGGA-----GGAGCGUUguUGGC- -5' |
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24337 | 3' | -56.6 | NC_005264.1 | + | 128709 | 0.66 | 0.878799 |
Target: 5'- gGGGGAggcgggcucGCGCCUCgaCGCuguuuCGGCCGc -3' miRNA: 3'- gUCCCU---------CGUGGAGgaGCGuu---GUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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