miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 3' -57.6 NC_005264.1 + 142606 0.66 0.863148
Target:  5'- -cGCgacGAugGCCAC---GCCGGGCUa -3'
miRNA:   3'- caUGau-CUugCGGUGcucCGGCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 155829 0.66 0.863148
Target:  5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3'
miRNA:   3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5'
24338 3' -57.6 NC_005264.1 + 48390 0.66 0.863148
Target:  5'- -gACUGGGGCGUCggGCGGcGGCCaggagcggguggGGGCa -3'
miRNA:   3'- caUGAUCUUGCGG--UGCU-CCGG------------CCCGa -5'
24338 3' -57.6 NC_005264.1 + 46924 0.66 0.863148
Target:  5'- -gGCUcucaAGGACuGCUACGGGGaCGGGUUc -3'
miRNA:   3'- caUGA----UCUUG-CGGUGCUCCgGCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 36803 0.66 0.863148
Target:  5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3'
miRNA:   3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5'
24338 3' -57.6 NC_005264.1 + 75716 0.66 0.85555
Target:  5'- -gACUGGuGCGCCccGCGGGcGCCGgaGGCc -3'
miRNA:   3'- caUGAUCuUGCGG--UGCUC-CGGC--CCGa -5'
24338 3' -57.6 NC_005264.1 + 152678 0.66 0.85555
Target:  5'- -gGCUGGGACcaaGCGGGGgCGGGUa -3'
miRNA:   3'- caUGAUCUUGcggUGCUCCgGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 18054 0.66 0.85555
Target:  5'- -aGCggcGGCGCCGCGA-GCCaGGGCg -3'
miRNA:   3'- caUGaucUUGCGGUGCUcCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 59998 0.66 0.85555
Target:  5'- -aGCgAGAcgGCCGCGuGGCCGcGGCc -3'
miRNA:   3'- caUGaUCUugCGGUGCuCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 53274 0.66 0.85555
Target:  5'- -cGCUAGAuccugGCCGCGcGGGCUucggGGGCa -3'
miRNA:   3'- caUGAUCUug---CGGUGC-UCCGG----CCCGa -5'
24338 3' -57.6 NC_005264.1 + 67469 0.66 0.847754
Target:  5'- -aGCUcguGAAa-CC-CGAGGCCGGGCc -3'
miRNA:   3'- caUGAu--CUUgcGGuGCUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 155250 0.66 0.839766
Target:  5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3'
miRNA:   3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5'
24338 3' -57.6 NC_005264.1 + 11033 0.66 0.839766
Target:  5'- -gACUAGucuaGAUGCCaaaucaagGCGGGGCCuGGCg -3'
miRNA:   3'- caUGAUC----UUGCGG--------UGCUCCGGcCCGa -5'
24338 3' -57.6 NC_005264.1 + 36223 0.66 0.839766
Target:  5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3'
miRNA:   3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5'
24338 3' -57.6 NC_005264.1 + 110123 0.66 0.839766
Target:  5'- -gGCcgAGAGcCGCCGCGcuuuugGGGgCGGGCg -3'
miRNA:   3'- caUGa-UCUU-GCGGUGC------UCCgGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 129550 0.66 0.839766
Target:  5'- -gGCuUAGGcguCGCCGCGuGGUCGuGGCa -3'
miRNA:   3'- caUG-AUCUu--GCGGUGCuCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 142963 0.66 0.839766
Target:  5'- -gGCUAGcGCgGCCGCGGcGGUcucuCGGGCa -3'
miRNA:   3'- caUGAUCuUG-CGGUGCU-CCG----GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 15725 0.66 0.839766
Target:  5'- -aGCaAGAACGCggCACGGcGGCCuGGCUu -3'
miRNA:   3'- caUGaUCUUGCG--GUGCU-CCGGcCCGA- -5'
24338 3' -57.6 NC_005264.1 + 104141 0.66 0.838957
Target:  5'- --cCUAGuaAACGCgGCcgucauaGAGGCCGGGUg -3'
miRNA:   3'- cauGAUC--UUGCGgUG-------CUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 31646 0.66 0.831593
Target:  5'- -gGCUAGGaggaauaugugACGCgaacugCGCGAGGCaGGGCUc -3'
miRNA:   3'- caUGAUCU-----------UGCG------GUGCUCCGgCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.