Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 3' | -57.6 | NC_005264.1 | + | 2719 | 0.67 | 0.797199 |
Target: 5'- ---aUAGGcCGCC-CGcGGCCGGGCc -3' miRNA: 3'- caugAUCUuGCGGuGCuCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 3614 | 0.74 | 0.402953 |
Target: 5'- -cGC-GGGGgGCCGCGAGGgCGGGCg -3' miRNA: 3'- caUGaUCUUgCGGUGCUCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 5020 | 0.71 | 0.581227 |
Target: 5'- uUGCgcagAGGAgGCCACGAGGUuccgcgucgUGGGCg -3' miRNA: 3'- cAUGa---UCUUgCGGUGCUCCG---------GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 5248 | 0.69 | 0.682238 |
Target: 5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3' miRNA: 3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 7917 | 0.68 | 0.76047 |
Target: 5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3' miRNA: 3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 11033 | 0.66 | 0.839766 |
Target: 5'- -gACUAGucuaGAUGCCaaaucaagGCGGGGCCuGGCg -3' miRNA: 3'- caUGAUC----UUGCGG--------UGCUCCGGcCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 14045 | 0.74 | 0.42014 |
Target: 5'- -----cGGACGUgGCGGGGCCGGGUg -3' miRNA: 3'- caugauCUUGCGgUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 15725 | 0.66 | 0.839766 |
Target: 5'- -aGCaAGAACGCggCACGGcGGCCuGGCUu -3' miRNA: 3'- caUGaUCUUGCG--GUGCU-CCGGcCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 16429 | 0.67 | 0.813859 |
Target: 5'- -cGCUcGAcUGCCGCGGGGCCugcccgcGGGUg -3' miRNA: 3'- caUGAuCUuGCGGUGCUCCGG-------CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 16603 | 0.72 | 0.51217 |
Target: 5'- aGUugUAuuccGGGCGCCACGAcGCCGcGGCg -3' miRNA: 3'- -CAugAU----CUUGCGGUGCUcCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 18054 | 0.66 | 0.85555 |
Target: 5'- -aGCggcGGCGCCGCGA-GCCaGGGCg -3' miRNA: 3'- caUGaucUUGCGGUGCUcCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 19426 | 0.71 | 0.591285 |
Target: 5'- -gGCgccgGGuGugGCCGCGGGGCgCGGGUg -3' miRNA: 3'- caUGa---UC-UugCGGUGCUCCG-GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 25203 | 0.67 | 0.806037 |
Target: 5'- cGUACguguuGGCGCaCACGGuGGCCaGGGCa -3' miRNA: 3'- -CAUGauc--UUGCG-GUGCU-CCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 27500 | 0.67 | 0.779092 |
Target: 5'- aUACUAGAgGCGCagugGCG-GGCUGGGUc -3' miRNA: 3'- cAUGAUCU-UGCGg---UGCuCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 30901 | 0.74 | 0.42014 |
Target: 5'- -cGCgucggGGGAgGaCUGCGAGGCCGGGCg -3' miRNA: 3'- caUGa----UCUUgC-GGUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 31570 | 0.67 | 0.779092 |
Target: 5'- -gACgUGGAgGCGCCA-GAGGUgGGGCg -3' miRNA: 3'- caUG-AUCU-UGCGGUgCUCCGgCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 31646 | 0.66 | 0.831593 |
Target: 5'- -gGCUAGGaggaauaugugACGCgaacugCGCGAGGCaGGGCUc -3' miRNA: 3'- caUGAUCU-----------UGCG------GUGCUCCGgCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 36223 | 0.66 | 0.839766 |
Target: 5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3' miRNA: 3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 36803 | 0.66 | 0.863148 |
Target: 5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3' miRNA: 3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 43280 | 0.69 | 0.682238 |
Target: 5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3' miRNA: 3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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