miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 3' -57.6 NC_005264.1 + 2719 0.67 0.797199
Target:  5'- ---aUAGGcCGCC-CGcGGCCGGGCc -3'
miRNA:   3'- caugAUCUuGCGGuGCuCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 3614 0.74 0.402953
Target:  5'- -cGC-GGGGgGCCGCGAGGgCGGGCg -3'
miRNA:   3'- caUGaUCUUgCGGUGCUCCgGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 5020 0.71 0.581227
Target:  5'- uUGCgcagAGGAgGCCACGAGGUuccgcgucgUGGGCg -3'
miRNA:   3'- cAUGa---UCUUgCGGUGCUCCG---------GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 5248 0.69 0.682238
Target:  5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3'
miRNA:   3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 7917 0.68 0.76047
Target:  5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3'
miRNA:   3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5'
24338 3' -57.6 NC_005264.1 + 11033 0.66 0.839766
Target:  5'- -gACUAGucuaGAUGCCaaaucaagGCGGGGCCuGGCg -3'
miRNA:   3'- caUGAUC----UUGCGG--------UGCUCCGGcCCGa -5'
24338 3' -57.6 NC_005264.1 + 14045 0.74 0.42014
Target:  5'- -----cGGACGUgGCGGGGCCGGGUg -3'
miRNA:   3'- caugauCUUGCGgUGCUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 15725 0.66 0.839766
Target:  5'- -aGCaAGAACGCggCACGGcGGCCuGGCUu -3'
miRNA:   3'- caUGaUCUUGCG--GUGCU-CCGGcCCGA- -5'
24338 3' -57.6 NC_005264.1 + 16429 0.67 0.813859
Target:  5'- -cGCUcGAcUGCCGCGGGGCCugcccgcGGGUg -3'
miRNA:   3'- caUGAuCUuGCGGUGCUCCGG-------CCCGa -5'
24338 3' -57.6 NC_005264.1 + 16603 0.72 0.51217
Target:  5'- aGUugUAuuccGGGCGCCACGAcGCCGcGGCg -3'
miRNA:   3'- -CAugAU----CUUGCGGUGCUcCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 18054 0.66 0.85555
Target:  5'- -aGCggcGGCGCCGCGA-GCCaGGGCg -3'
miRNA:   3'- caUGaucUUGCGGUGCUcCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 19426 0.71 0.591285
Target:  5'- -gGCgccgGGuGugGCCGCGGGGCgCGGGUg -3'
miRNA:   3'- caUGa---UC-UugCGGUGCUCCG-GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 25203 0.67 0.806037
Target:  5'- cGUACguguuGGCGCaCACGGuGGCCaGGGCa -3'
miRNA:   3'- -CAUGauc--UUGCG-GUGCU-CCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 27500 0.67 0.779092
Target:  5'- aUACUAGAgGCGCagugGCG-GGCUGGGUc -3'
miRNA:   3'- cAUGAUCU-UGCGg---UGCuCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 30901 0.74 0.42014
Target:  5'- -cGCgucggGGGAgGaCUGCGAGGCCGGGCg -3'
miRNA:   3'- caUGa----UCUUgC-GGUGCUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 31570 0.67 0.779092
Target:  5'- -gACgUGGAgGCGCCA-GAGGUgGGGCg -3'
miRNA:   3'- caUG-AUCU-UGCGGUgCUCCGgCCCGa -5'
24338 3' -57.6 NC_005264.1 + 31646 0.66 0.831593
Target:  5'- -gGCUAGGaggaauaugugACGCgaacugCGCGAGGCaGGGCUc -3'
miRNA:   3'- caUGAUCU-----------UGCG------GUGCUCCGgCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 36223 0.66 0.839766
Target:  5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3'
miRNA:   3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5'
24338 3' -57.6 NC_005264.1 + 36803 0.66 0.863148
Target:  5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3'
miRNA:   3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5'
24338 3' -57.6 NC_005264.1 + 43280 0.69 0.682238
Target:  5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3'
miRNA:   3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.