Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 3' | -57.6 | NC_005264.1 | + | 162307 | 0.69 | 0.682238 |
Target: 5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3' miRNA: 3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 159290 | 0.69 | 0.682238 |
Target: 5'- ----aGGAaagACGCCACGAGGgggCGGGCa -3' miRNA: 3'- caugaUCU---UGCGGUGCUCCg--GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 157560 | 1.07 | 0.002903 |
Target: 5'- aGUACUAGAACGCCACGAGGCCGGGCUu -3' miRNA: 3'- -CAUGAUCUUGCGGUGCUCCGGCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 156894 | 0.67 | 0.788215 |
Target: 5'- -aACaGGcAACGCCGCGGGuuCGGGCc -3' miRNA: 3'- caUGaUC-UUGCGGUGCUCcgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 155829 | 0.66 | 0.863148 |
Target: 5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3' miRNA: 3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 155250 | 0.66 | 0.839766 |
Target: 5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3' miRNA: 3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 152678 | 0.66 | 0.85555 |
Target: 5'- -gGCUGGGACcaaGCGGGGgCGGGUa -3' miRNA: 3'- caUGAUCUUGcggUGCUCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 150690 | 0.69 | 0.672185 |
Target: 5'- -gACgcGAACG-CGCGAGGCaGGGCUc -3' miRNA: 3'- caUGauCUUGCgGUGCUCCGgCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 150597 | 0.67 | 0.779092 |
Target: 5'- -gACgUGGAgGCGCCA-GAGGUgGGGCg -3' miRNA: 3'- caUG-AUCU-UGCGGUgCUCCGgCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 149927 | 0.74 | 0.42014 |
Target: 5'- -cGCgucggGGGAgGaCUGCGAGGCCGGGCg -3' miRNA: 3'- caUGa----UCUUgC-GGUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 146954 | 0.71 | 0.581227 |
Target: 5'- -gGCUGGAugGCgcUGAGGCCGcaGGCUg -3' miRNA: 3'- caUGAUCUugCGguGCUCCGGC--CCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 142963 | 0.66 | 0.839766 |
Target: 5'- -gGCUAGcGCgGCCGCGGcGGUcucuCGGGCa -3' miRNA: 3'- caUGAUCuUG-CGGUGCU-CCG----GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 142606 | 0.66 | 0.863148 |
Target: 5'- -cGCgacGAugGCCAC---GCCGGGCUa -3' miRNA: 3'- caUGau-CUugCGGUGcucCGGCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 132473 | 0.68 | 0.768909 |
Target: 5'- aGUGC-AGAAUuacggcaGCCACGuGGCCgcaGGGCa -3' miRNA: 3'- -CAUGaUCUUG-------CGGUGCuCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 129550 | 0.66 | 0.839766 |
Target: 5'- -gGCuUAGGcguCGCCGCGuGGUCGuGGCa -3' miRNA: 3'- caUG-AUCUu--GCGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 126943 | 0.68 | 0.76047 |
Target: 5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3' miRNA: 3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 124275 | 0.69 | 0.682238 |
Target: 5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3' miRNA: 3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 122641 | 0.74 | 0.402953 |
Target: 5'- -cGC-GGGGgGCCGCGAGGgCGGGCg -3' miRNA: 3'- caUGaUCUUgCGGUGCUCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 114748 | 0.68 | 0.76047 |
Target: 5'- cGUGC-AGAAC-CCGCGcGGCCGcGGUa -3' miRNA: 3'- -CAUGaUCUUGcGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 110123 | 0.66 | 0.839766 |
Target: 5'- -gGCcgAGAGcCGCCGCGcuuuugGGGgCGGGCg -3' miRNA: 3'- caUGa-UCUU-GCGGUGC------UCCgGCCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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