miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 3' -57.6 NC_005264.1 + 46924 0.66 0.863148
Target:  5'- -gGCUcucaAGGACuGCUACGGGGaCGGGUUc -3'
miRNA:   3'- caUGA----UCUUG-CGGUGCUCCgGCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 48390 0.66 0.863148
Target:  5'- -gACUGGGGCGUCggGCGGcGGCCaggagcggguggGGGCa -3'
miRNA:   3'- caUGAUCUUGCGG--UGCU-CCGG------------CCCGa -5'
24338 3' -57.6 NC_005264.1 + 53120 0.74 0.411491
Target:  5'- -gGCgAGGGgGCCGagGAGGCCGGGCa -3'
miRNA:   3'- caUGaUCUUgCGGUg-CUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 53274 0.66 0.85555
Target:  5'- -cGCUAGAuccugGCCGCGcGGGCUucggGGGCa -3'
miRNA:   3'- caUGAUCUug---CGGUGC-UCCGG----CCCGa -5'
24338 3' -57.6 NC_005264.1 + 53913 0.68 0.721959
Target:  5'- gGUGCU-GAAaGCCACGcGGCuCGGGUUc -3'
miRNA:   3'- -CAUGAuCUUgCGGUGCuCCG-GCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 57885 0.71 0.551296
Target:  5'- ---gUAGAugGgCCACGAGGCuCGGcGCUu -3'
miRNA:   3'- caugAUCUugC-GGUGCUCCG-GCC-CGA- -5'
24338 3' -57.6 NC_005264.1 + 59998 0.66 0.85555
Target:  5'- -aGCgAGAcgGCCGCGuGGCCGcGGCc -3'
miRNA:   3'- caUGaUCUugCGGUGCuCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 61791 0.67 0.806037
Target:  5'- -gACUcGAGCagcuccaccggGCCGCGGGcaucGCCGGGCa -3'
miRNA:   3'- caUGAuCUUG-----------CGGUGCUC----CGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 66601 0.73 0.464973
Target:  5'- -cGCUGGGcuGCGCCGCGuuGCCGGcGCc -3'
miRNA:   3'- caUGAUCU--UGCGGUGCucCGGCC-CGa -5'
24338 3' -57.6 NC_005264.1 + 67469 0.66 0.847754
Target:  5'- -aGCUcguGAAa-CC-CGAGGCCGGGCc -3'
miRNA:   3'- caUGAu--CUUgcGGuGCUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 74492 0.68 0.741401
Target:  5'- uUGCgAGAGCGCCAaagGcGGCCaGGCUg -3'
miRNA:   3'- cAUGaUCUUGCGGUg--CuCCGGcCCGA- -5'
24338 3' -57.6 NC_005264.1 + 75716 0.66 0.85555
Target:  5'- -gACUGGuGCGCCccGCGGGcGCCGgaGGCc -3'
miRNA:   3'- caUGAUCuUGCGG--UGCUC-CGGC--CCGa -5'
24338 3' -57.6 NC_005264.1 + 79387 0.72 0.54142
Target:  5'- uUACUucAGAAcCGCCgcgggcgugGCGAGGCCGcGGCg -3'
miRNA:   3'- cAUGA--UCUU-GCGG---------UGCUCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 79800 0.69 0.6621
Target:  5'- uUGCUAGuGCGCaACGAGGCCccugcGGCg -3'
miRNA:   3'- cAUGAUCuUGCGgUGCUCCGGc----CCGa -5'
24338 3' -57.6 NC_005264.1 + 95339 0.68 0.76047
Target:  5'- -----cGGGCGCCGCGAaacggacucGGCgGGGCg -3'
miRNA:   3'- caugauCUUGCGGUGCU---------CCGgCCCGa -5'
24338 3' -57.6 NC_005264.1 + 99859 0.68 0.721959
Target:  5'- cUACUGacguGCGCCAa-GGGCUGGGCg -3'
miRNA:   3'- cAUGAUcu--UGCGGUgcUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 102115 0.73 0.437764
Target:  5'- -gGCUGGcGGCGgUACGAGGCCGcGGCc -3'
miRNA:   3'- caUGAUC-UUGCgGUGCUCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 104141 0.66 0.838957
Target:  5'- --cCUAGuaAACGCgGCcgucauaGAGGCCGGGUg -3'
miRNA:   3'- cauGAUC--UUGCGgUG-------CUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 110123 0.66 0.839766
Target:  5'- -gGCcgAGAGcCGCCGCGcuuuugGGGgCGGGCg -3'
miRNA:   3'- caUGa-UCUU-GCGGUGC------UCCgGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 114748 0.68 0.76047
Target:  5'- cGUGC-AGAAC-CCGCGcGGCCGcGGUa -3'
miRNA:   3'- -CAUGaUCUUGcGGUGCuCCGGC-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.