Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 3' | -57.6 | NC_005264.1 | + | 57885 | 0.71 | 0.551296 |
Target: 5'- ---gUAGAugGgCCACGAGGCuCGGcGCUu -3' miRNA: 3'- caugAUCUugC-GGUGCUCCG-GCC-CGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 5020 | 0.71 | 0.581227 |
Target: 5'- uUGCgcagAGGAgGCCACGAGGUuccgcgucgUGGGCg -3' miRNA: 3'- cAUGa---UCUUgCGGUGCUCCG---------GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 19426 | 0.71 | 0.591285 |
Target: 5'- -gGCgccgGGuGugGCCGCGGGGCgCGGGUg -3' miRNA: 3'- caUGa---UC-UugCGGUGCUCCG-GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 79800 | 0.69 | 0.6621 |
Target: 5'- uUGCUAGuGCGCaACGAGGCCccugcGGCg -3' miRNA: 3'- cAUGAUCuUGCGgUGCUCCGGc----CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 114748 | 0.68 | 0.76047 |
Target: 5'- cGUGC-AGAAC-CCGCGcGGCCGcGGUa -3' miRNA: 3'- -CAUGaUCUUGcGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 74492 | 0.68 | 0.741401 |
Target: 5'- uUGCgAGAGCGCCAaagGcGGCCaGGCUg -3' miRNA: 3'- cAUGaUCUUGCGGUg--CuCCGGcCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 99859 | 0.68 | 0.721959 |
Target: 5'- cUACUGacguGCGCCAa-GGGCUGGGCg -3' miRNA: 3'- cAUGAUcu--UGCGGUgcUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 162307 | 0.69 | 0.682238 |
Target: 5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3' miRNA: 3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 124275 | 0.69 | 0.682238 |
Target: 5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3' miRNA: 3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 150690 | 0.69 | 0.672185 |
Target: 5'- -gACgcGAACG-CGCGAGGCaGGGCUc -3' miRNA: 3'- caUGauCUUGCgGUGCUCCGgCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 25203 | 0.67 | 0.806037 |
Target: 5'- cGUACguguuGGCGCaCACGGuGGCCaGGGCa -3' miRNA: 3'- -CAUGauc--UUGCG-GUGCU-CCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 31646 | 0.66 | 0.831593 |
Target: 5'- -gGCUAGGaggaauaugugACGCgaacugCGCGAGGCaGGGCUc -3' miRNA: 3'- caUGAUCU-----------UGCG------GUGCUCCGgCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 36223 | 0.66 | 0.839766 |
Target: 5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3' miRNA: 3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 110123 | 0.66 | 0.839766 |
Target: 5'- -gGCcgAGAGcCGCCGCGcuuuugGGGgCGGGCg -3' miRNA: 3'- caUGa-UCUU-GCGGUGC------UCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 129550 | 0.66 | 0.839766 |
Target: 5'- -gGCuUAGGcguCGCCGCGuGGUCGuGGCa -3' miRNA: 3'- caUG-AUCUu--GCGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 142963 | 0.66 | 0.839766 |
Target: 5'- -gGCUAGcGCgGCCGCGGcGGUcucuCGGGCa -3' miRNA: 3'- caUGAUCuUG-CGGUGCU-CCG----GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 53274 | 0.66 | 0.85555 |
Target: 5'- -cGCUAGAuccugGCCGCGcGGGCUucggGGGCa -3' miRNA: 3'- caUGAUCUug---CGGUGC-UCCGG----CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 36803 | 0.66 | 0.863148 |
Target: 5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3' miRNA: 3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 46924 | 0.66 | 0.863148 |
Target: 5'- -gGCUcucaAGGACuGCUACGGGGaCGGGUUc -3' miRNA: 3'- caUGA----UCUUG-CGGUGCUCCgGCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 157560 | 1.07 | 0.002903 |
Target: 5'- aGUACUAGAACGCCACGAGGCCGGGCUu -3' miRNA: 3'- -CAUGAUCUUGCGGUGCUCCGGCCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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