miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 3' -57.6 NC_005264.1 + 57885 0.71 0.551296
Target:  5'- ---gUAGAugGgCCACGAGGCuCGGcGCUu -3'
miRNA:   3'- caugAUCUugC-GGUGCUCCG-GCC-CGA- -5'
24338 3' -57.6 NC_005264.1 + 5020 0.71 0.581227
Target:  5'- uUGCgcagAGGAgGCCACGAGGUuccgcgucgUGGGCg -3'
miRNA:   3'- cAUGa---UCUUgCGGUGCUCCG---------GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 19426 0.71 0.591285
Target:  5'- -gGCgccgGGuGugGCCGCGGGGCgCGGGUg -3'
miRNA:   3'- caUGa---UC-UugCGGUGCUCCG-GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 150690 0.69 0.672185
Target:  5'- -gACgcGAACG-CGCGAGGCaGGGCUc -3'
miRNA:   3'- caUGauCUUGCgGUGCUCCGgCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 124275 0.69 0.682238
Target:  5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3'
miRNA:   3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 162307 0.69 0.682238
Target:  5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3'
miRNA:   3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 99859 0.68 0.721959
Target:  5'- cUACUGacguGCGCCAa-GGGCUGGGCg -3'
miRNA:   3'- cAUGAUcu--UGCGGUgcUCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 74492 0.68 0.741401
Target:  5'- uUGCgAGAGCGCCAaagGcGGCCaGGCUg -3'
miRNA:   3'- cAUGaUCUUGCGGUg--CuCCGGcCCGA- -5'
24338 3' -57.6 NC_005264.1 + 114748 0.68 0.76047
Target:  5'- cGUGC-AGAAC-CCGCGcGGCCGcGGUa -3'
miRNA:   3'- -CAUGaUCUUGcGGUGCuCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 79800 0.69 0.6621
Target:  5'- uUGCUAGuGCGCaACGAGGCCccugcGGCg -3'
miRNA:   3'- cAUGAUCuUGCGgUGCUCCGGc----CCGa -5'
24338 3' -57.6 NC_005264.1 + 95339 0.68 0.76047
Target:  5'- -----cGGGCGCCGCGAaacggacucGGCgGGGCg -3'
miRNA:   3'- caugauCUUGCGGUGCU---------CCGgCCCGa -5'
24338 3' -57.6 NC_005264.1 + 7917 0.68 0.76047
Target:  5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3'
miRNA:   3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5'
24338 3' -57.6 NC_005264.1 + 53913 0.68 0.721959
Target:  5'- gGUGCU-GAAaGCCACGcGGCuCGGGUUc -3'
miRNA:   3'- -CAUGAuCUUgCGGUGCuCCG-GCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 159290 0.69 0.682238
Target:  5'- ----aGGAaagACGCCACGAGGgggCGGGCa -3'
miRNA:   3'- caugaUCU---UGCGGUGCUCCg--GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 43280 0.69 0.682238
Target:  5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3'
miRNA:   3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 5248 0.69 0.682238
Target:  5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3'
miRNA:   3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 146954 0.71 0.581227
Target:  5'- -gGCUGGAugGCgcUGAGGCCGcaGGCUg -3'
miRNA:   3'- caUGAUCUugCGguGCUCCGGC--CCGA- -5'
24338 3' -57.6 NC_005264.1 + 79387 0.72 0.54142
Target:  5'- uUACUucAGAAcCGCCgcgggcgugGCGAGGCCGcGGCg -3'
miRNA:   3'- cAUGA--UCUU-GCGG---------UGCUCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 16603 0.72 0.51217
Target:  5'- aGUugUAuuccGGGCGCCACGAcGCCGcGGCg -3'
miRNA:   3'- -CAugAU----CUUGCGGUGCUcCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 102115 0.73 0.437764
Target:  5'- -gGCUGGcGGCGgUACGAGGCCGcGGCc -3'
miRNA:   3'- caUGAUC-UUGCgGUGCUCCGGC-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.