Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 3' | -57.6 | NC_005264.1 | + | 95339 | 0.68 | 0.76047 |
Target: 5'- -----cGGGCGCCGCGAaacggacucGGCgGGGCg -3' miRNA: 3'- caugauCUUGCGGUGCU---------CCGgCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 30901 | 0.74 | 0.42014 |
Target: 5'- -cGCgucggGGGAgGaCUGCGAGGCCGGGCg -3' miRNA: 3'- caUGa----UCUUgC-GGUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 146954 | 0.71 | 0.581227 |
Target: 5'- -gGCUGGAugGCgcUGAGGCCGcaGGCUg -3' miRNA: 3'- caUGAUCUugCGguGCUCCGGC--CCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 132473 | 0.68 | 0.768909 |
Target: 5'- aGUGC-AGAAUuacggcaGCCACGuGGCCgcaGGGCa -3' miRNA: 3'- -CAUGaUCUUG-------CGGUGCuCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 157560 | 1.07 | 0.002903 |
Target: 5'- aGUACUAGAACGCCACGAGGCCGGGCUu -3' miRNA: 3'- -CAUGAUCUUGCGGUGCUCCGGCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 31570 | 0.67 | 0.779092 |
Target: 5'- -gACgUGGAgGCGCCA-GAGGUgGGGCg -3' miRNA: 3'- caUG-AUCU-UGCGGUgCUCCGgCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 156894 | 0.67 | 0.788215 |
Target: 5'- -aACaGGcAACGCCGCGGGuuCGGGCc -3' miRNA: 3'- caUGaUC-UUGCGGUGCUCcgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 7917 | 0.68 | 0.76047 |
Target: 5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3' miRNA: 3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 59998 | 0.66 | 0.85555 |
Target: 5'- -aGCgAGAcgGCCGCGuGGCCGcGGCc -3' miRNA: 3'- caUGaUCUugCGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 126943 | 0.68 | 0.76047 |
Target: 5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3' miRNA: 3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 114748 | 0.68 | 0.76047 |
Target: 5'- cGUGC-AGAAC-CCGCGcGGCCGcGGUa -3' miRNA: 3'- -CAUGaUCUUGcGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 74492 | 0.68 | 0.741401 |
Target: 5'- uUGCgAGAGCGCCAaagGcGGCCaGGCUg -3' miRNA: 3'- cAUGaUCUUGCGGUg--CuCCGGcCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 99859 | 0.68 | 0.721959 |
Target: 5'- cUACUGacguGCGCCAa-GGGCUGGGCg -3' miRNA: 3'- cAUGAUcu--UGCGGUgcUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 19426 | 0.71 | 0.591285 |
Target: 5'- -gGCgccgGGuGugGCCGCGGGGCgCGGGUg -3' miRNA: 3'- caUGa---UC-UugCGGUGCUCCG-GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 67469 | 0.66 | 0.847754 |
Target: 5'- -aGCUcguGAAa-CC-CGAGGCCGGGCc -3' miRNA: 3'- caUGAu--CUUgcGGuGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 75716 | 0.66 | 0.85555 |
Target: 5'- -gACUGGuGCGCCccGCGGGcGCCGgaGGCc -3' miRNA: 3'- caUGAUCuUGCGG--UGCUC-CGGC--CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 152678 | 0.66 | 0.85555 |
Target: 5'- -gGCUGGGACcaaGCGGGGgCGGGUa -3' miRNA: 3'- caUGAUCUUGcggUGCUCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 5020 | 0.71 | 0.581227 |
Target: 5'- uUGCgcagAGGAgGCCACGAGGUuccgcgucgUGGGCg -3' miRNA: 3'- cAUGa---UCUUgCGGUGCUCCG---------GCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 18054 | 0.66 | 0.85555 |
Target: 5'- -aGCggcGGCGCCGCGA-GCCaGGGCg -3' miRNA: 3'- caUGaucUUGCGGUGCUcCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 142606 | 0.66 | 0.863148 |
Target: 5'- -cGCgacGAugGCCAC---GCCGGGCUa -3' miRNA: 3'- caUGau-CUugCGGUGcucCGGCCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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