Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 3' | -57.6 | NC_005264.1 | + | 66601 | 0.73 | 0.464973 |
Target: 5'- -cGCUGGGcuGCGCCGCGuuGCCGGcGCc -3' miRNA: 3'- caUGAUCU--UGCGGUGCucCGGCC-CGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 149927 | 0.74 | 0.42014 |
Target: 5'- -cGCgucggGGGAgGaCUGCGAGGCCGGGCg -3' miRNA: 3'- caUGa----UCUUgC-GGUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 14045 | 0.74 | 0.42014 |
Target: 5'- -----cGGACGUgGCGGGGCCGGGUg -3' miRNA: 3'- caugauCUUGCGgUGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 126943 | 0.68 | 0.76047 |
Target: 5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3' miRNA: 3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 150597 | 0.67 | 0.779092 |
Target: 5'- -gACgUGGAgGCGCCA-GAGGUgGGGCg -3' miRNA: 3'- caUG-AUCU-UGCGGUgCUCCGgCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 142606 | 0.66 | 0.863148 |
Target: 5'- -cGCgacGAugGCCAC---GCCGGGCUa -3' miRNA: 3'- caUGau-CUugCGGUGcucCGGCCCGA- -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 59998 | 0.66 | 0.85555 |
Target: 5'- -aGCgAGAcgGCCGCGuGGCCGcGGCc -3' miRNA: 3'- caUGaUCUugCGGUGCuCCGGC-CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 18054 | 0.66 | 0.85555 |
Target: 5'- -aGCggcGGCGCCGCGA-GCCaGGGCg -3' miRNA: 3'- caUGaucUUGCGGUGCUcCGG-CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 152678 | 0.66 | 0.85555 |
Target: 5'- -gGCUGGGACcaaGCGGGGgCGGGUa -3' miRNA: 3'- caUGAUCUUGcggUGCUCCgGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 75716 | 0.66 | 0.85555 |
Target: 5'- -gACUGGuGCGCCccGCGGGcGCCGgaGGCc -3' miRNA: 3'- caUGAUCuUGCGG--UGCUC-CGGC--CCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 67469 | 0.66 | 0.847754 |
Target: 5'- -aGCUcguGAAa-CC-CGAGGCCGGGCc -3' miRNA: 3'- caUGAu--CUUgcGGuGCUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 11033 | 0.66 | 0.839766 |
Target: 5'- -gACUAGucuaGAUGCCaaaucaagGCGGGGCCuGGCg -3' miRNA: 3'- caUGAUC----UUGCGG--------UGCUCCGGcCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 155250 | 0.66 | 0.839766 |
Target: 5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3' miRNA: 3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 104141 | 0.66 | 0.838957 |
Target: 5'- --cCUAGuaAACGCgGCcgucauaGAGGCCGGGUg -3' miRNA: 3'- cauGAUC--UUGCGgUG-------CUCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 16429 | 0.67 | 0.813859 |
Target: 5'- -cGCUcGAcUGCCGCGGGGCCugcccgcGGGUg -3' miRNA: 3'- caUGAuCUuGCGGUGCUCCGG-------CCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 61791 | 0.67 | 0.806037 |
Target: 5'- -gACUcGAGCagcuccaccggGCCGCGGGcaucGCCGGGCa -3' miRNA: 3'- caUGAuCUUG-----------CGGUGCUC----CGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 27500 | 0.67 | 0.779092 |
Target: 5'- aUACUAGAgGCGCagugGCG-GGCUGGGUc -3' miRNA: 3'- cAUGAUCU-UGCGg---UGCuCCGGCCCGa -5' |
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24338 | 3' | -57.6 | NC_005264.1 | + | 122641 | 0.74 | 0.402953 |
Target: 5'- -cGC-GGGGgGCCGCGAGGgCGGGCg -3' miRNA: 3'- caUGaUCUUgCGGUGCUCCgGCCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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